BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZF02FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1399 1578 0.0
>3x_Contig1399
Length = 7157
Score = 1578 bits (796), Expect = 0.0
Identities = 811/816 (99%)
Strand = Plus / Plus
Query: 86 cataatgataatctcacgttcgatcccatatggcagctgtttgatctggttcgacttaac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 cataatgataatctcacgttcgatcccatatggcagctgtttgatctggttcgacttaac 4702
Query: 146 gaattttttgggaactatcttaatcgctgacagtttccccgtttccatattctttgctag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 gaattttttgggaactatcttaatcgctgacagtttccccgtttccatattctttgctag 4762
Query: 206 acgaactcgacccgatgaccctttccccaaagtcttacccaatttccagggacctaccgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 acgaactcgacccgatgaccctttccccaaagtcttacccaatttccagggacctaccgt 4822
Query: 266 atcgcggtttctcctcttcgaagtcttggtattattaacattagcattcgacgatgcagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 atcgcggtttctcctcttcgaagtcttggtattattaacattagcattcgacgatgcagt 4882
Query: 326 cgaaatctgtgaaagacgcttagtagcgtctgttactgactgaacaaccctattcaaatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4883 cgaaatctgtgaaagacgcttagtagcgtctgttactgactgaacaaccctattcaaatg 4942
Query: 386 ttcattatttgcacgatatgggacctggccgtgactagaattatccttcattgccacaac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 ttcattatttgcacgatatgggacctggccgtgactagaattatccttcattgccacaac 5002
Query: 446 ggcagcttgaacagcacacgacatctagcacaaacaaagcaagcgagtgaaattgagaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5003 ggcagcttgaacagcacacgacatctagcacaaacaaagcaagcgagtgaaattgagaaa 5062
Query: 506 gcaaaagagcagaagagagcgtgtgtgagtgtttaagtatgataagcgaatgtaatgatt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063 gcaaaagagcagaagagagcgtgtgtgagtgtttaagtatgataagcgaatgtaatgatt 5122
Query: 566 ggaaaataaacacactctgtgatcaaatcaatgattcttcttcttcttattattattagt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5123 ggaaaataaacacactctgtgatcaaatcaatgattcttcttcttcttattattattagt 5182
Query: 626 attcttcttcttccttataattcaaatggtagacctagccttgtaatttgcagttccagc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5183 attcttcttcttccttataattcaaatggtagacctagccttgtaatttgcagttccagc 5242
Query: 686 agagcgacaaatcagcgttactgatgatgttaacgttgcttggtgtcttctctcttggat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5243 agagcgacaaatcagcgttactgatgatgttaacgttgcttggtgtcttctctcttggat 5302
Query: 746 gttgtttggtttcaaattctgattcaaacattgttatgtgtgcatatatttcatgaaagg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5303 gttgtttggtttcaaattctgattcaaacattgttatgtgtgcatatatttcatgaaagg 5362
Query: 806 gctttatttgtgtaatagttgaagtcattctgcacgactagtaaatactagccagacgcg 865
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5363 gctttatttggtaaatagttgaagtcattctgcacgactagtaaatactagcaagacgcg 5422
Query: 866 agtttgagctttgttcgcgaggacgaagacgcgaaa 901
|||||||||||||||||||| |||||||||||||||
Sbjct: 5423 agtttgagctttgttcgcgaagacgaagacgcgaaa 5458
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8168
Number of Sequences: 1807
Number of extensions: 8168
Number of successful extensions: 107
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)