BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZF04FM1.SCF screened BAC_end
         (909 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig424                                                         1542   0.0  

>3x_Contig424 
          Length = 1467

 Score = 1542 bits (778), Expect = 0.0
 Identities = 805/814 (98%)
 Strand = Plus / Minus

                                                                        
Query: 95   atttcagtagttaaatgtgtaatccctaaggatatgggctttttggaagtgatcttttta 154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 atttcagtagttaaatgtgtaatccctaaggatatgggctttttggaagtgatcttttta 1126

                                                                        
Query: 155  agtccggggggcaaattgctgaaacagtaccttacccttatgttacaggccagtgtatac 214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 agtccggggggcaaattgctgaaacagtaccttacccttatgttacaggccagtgtatac 1066

                                                                        
Query: 215  tatactattagattgaaattactgatagggtaatgccaatgagaactacagaattcatac 274
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 tatacgattagattgaaattactgatagggtaatgccaatgagaactacagaattcatac 1006

                                                                        
Query: 275  tcgtatagagcttgtataaatcagatcagttatattccagaaccaatgggttaagtgaga 334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 tcgtatagagcttgtataaatcagatcagttatattccagaaccaatgggttaagtgaga 946

                                                                        
Query: 335  acataatttgatatataattcaacttacaattctgttgtatgcggatttgagaagaatcc 394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  acataatttgatatataattcaacttacaattctgttgtatgcggatttgagaagaatcc 886

                                                                        
Query: 395  tattggggctctccaagcaaattatcgatcatgagccattttcagtgacatcagaaagct 454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  tattggggctctccaagcaaattatcgatcatgagccattttcagtgacatcagaaagct 826

                                                                        
Query: 455  tgaagttaacctgttaataccacgcttaaaagtctcaaacagacatccaatatgttgtta 514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  tgaagttaacctgttaataccacgcttaaaagtctcaaacagacatccaatatgttgtta 766

                                                                        
Query: 515  taagctgcgcgagtggtgtgcactctgtttttctatacatcgattttcttttgaaatacg 574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  taagctgcgcgagtggtgtgcactctgtttttctatacatcgattttcttttgaaatacg 706

                                                                        
Query: 575  taaaatttaaagcataaaacaataatatttgcccatatcaaaccatctactctaaacagc 634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  taaaatttaaagcataaaacaataatatttgcccatatcaaaccatctactctaaacagc 646

                                                                        
Query: 635  tagattttgtgtgaataaggaaataatgtctagtacccagacagaagccataagtgattc 694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  tagattttgtgtgaataaggaaataatgtctagtacccagacagaagccataagtgattc 586

                                                                        
Query: 695  acccatatgaacaaagtgttaacacacggaaatgacatggaaaatgttttcgtaaatgta 754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585  acccatatgaacaaagtgttaacacacggaaatgacatggaaaatgttttcgtaaatgta 526

                                                                        
Query: 755  tctacacttatcaccaaagttctgttaacggctcaatcgcacattaacattgatgaatag 814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525  tctacacttatcaccaaagttctgttaacggctcaatcgcacattaacattgatgaatag 466

                                                                        
Query: 815  gtatacgttcgtactttgagtttcacagtaaaaatcatagtccatattactggacaaatt 874
            ||||||||||||||||   |||||||||||||||||||||||||||| || | |||||||
Sbjct: 465  gtatacgttcgtacttgaggtttcacagtaaaaatcatagtccatataacggaacaaatt 406

                                              
Query: 875  agacttcgtctgactatcagcccaaacctgtaaa 908
            |||||||||||||||||||||| || ||||||||
Sbjct: 405  agacttcgtctgactatcagccaaaccctgtaaa 372


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5721
Number of Sequences: 1807
Number of extensions: 5721
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)