BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZF04RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig410 1449 0.0
>3x_Contig410
Length = 1641
Score = 1449 bits (731), Expect = 0.0
Identities = 745/747 (99%), Gaps = 2/747 (0%)
Strand = Plus / Plus
Query: 48 ttggaactattgtcgcatggtgagactttccctagacaagaagctactgctttattcttt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ttggaactattgtcgcatggtgagactttccctagacaagaagctactgctttattcttt 954
Query: 108 tccatttcgaaattgttccaacaccctaacgattctttgagacaaatcgtttacgtggct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 tccatttcgaaattgttccaacaccctaacgattctttgagacaaatcgtttacgtggct 1014
Query: 168 attaaggaattgtgtggaatctccgatgatatcttgatggctacttcttcaattatgaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 attaaggaattgtgtggaatctccgatgatatcttgatggctacttcttcaattatgaaa 1074
Query: 228 gatgttcaaaatggttcagatctagtgaagcctaatgctattagagcattgatccgtgtc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 gatgttcaaaatggttcagatctagtgaagcctaatgctattagagcattgatccgtgtc 1134
Query: 288 ttggatgagtccactgcattttctgcagaaagattattgaaaaattcgttggttagcaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 ttggatgagtccactgcattttctgcagaaagattattgaaaaattcgttggttagcaaa 1194
Query: 348 catccatctatttgttctgcttctttggtcagttcataccatttattaccaatcgctgaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 catccatctatttgttctgcttctttggtcagttcataccatttattaccaatcgctgaa 1254
Query: 408 actacggtgaagagatttgctaatgagactcaggaagccgttggtgatttgaaacagttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 actacggtgaagagatttgctaatgagactcaggaagccgttggtgatttgaaacagttg 1314
Query: 468 ccatatccagatgagaacagtagatattatccaactacgtctcatatctctcaataccat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1315 ccatatccagatgagaacagtagatattatccaactacgtctcatatctctcaataccat 1374
Query: 528 gcattgggtttgttgtaccaattgaagaatcacgataagatggctttgatcaaattgatc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1375 gcattgggtttgttgtaccaattgaagaatcacgataagatggctttgatcaaattgatc 1434
Query: 588 caacagtttgccggtcattcttcaccattgaaaaatcaattggctcaagtacaaatggtt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1435 caacagtttgccggtcattcttcaccattgaaaaatcaattggctcaagtacaaatggtt 1494
Query: 648 aaattcgtgcaccaattggttttgaaggatcctaactccatcccccagttcttaccacta 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1495 aaattcgtgcaccaattggttttgaaggatcctaactccatcccccagttcttaccacta 1554
Query: 708 atagctaattggttgcaaagcagacacgaggctgttgctttggaagctt-gtaagcttac 766
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1555 atagctaattggttgcaaagcagacacgaggctgttgctttggaagcttggtaagcttac 1614
Query: 767 tgcg-tctctatccaacttggttccta 792
|||| ||||||||||||||||||||||
Sbjct: 1615 tgcgttctctatccaacttggttccta 1641
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7127
Number of Sequences: 1807
Number of extensions: 7127
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)