BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZF06FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1618 0.0
>3x_Contig1468
Length = 9852
Score = 1618 bits (816), Expect = 0.0
Identities = 854/865 (98%), Gaps = 2/865 (0%)
Strand = Plus / Plus
Query: 87 cacaacttccgctaaaccaactgaaacctcgaaacctaatacaaatgccacatcactctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1618 cacaacttccgctaaaccaactgaaacctcgaaacctaatacaaatgccacatcactctt 1677
Query: 147 tggtgggaaccacactgatacaaaaccagccggtgctacttcagggttcaactttggttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1678 tggtgggaaccacactgatacaaaaccagccggtgctacttcagggttcaactttggttc 1737
Query: 207 tgccgctggagatgccatacaagccaagtttttcgctaagtctgggatcaaaacctgaag 266
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1738 tgccgctggagatgcca-acaagccaagtttttcgctaagtctgggatcaaaacctgaag 1796
Query: 267 aaaaaacctcaggcgcaaagacaggattctcatttggttcaaaaacggaggacaagccta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 aaaaaacctcaggcgcaaagacaggattctcatttggttcaaaaacggaggacaagccta 1856
Query: 327 cagatgctaaaccagcattttctttcggagcaaagccctctgggacagaacaagccggta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 cagatgctaaaccagcattttctttcggagcaaagccctctgggacagaacaagccggta 1916
Query: 387 agccagccttcagctttggatcaaaaccagtggctcctgaaccctctaaaccttccaatg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 agccagccttcagctttggatcaaaaccagtggctcctgaaccctctaaaccttccaatg 1976
Query: 447 acaaaccagaaagtaaacagggttttgcattcaatgttaaatctggcaacagtaaagagg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 acaaaccagaaagtaaacagggttttgcattcaatgttaaatctggcaacagtaaagagg 2036
Query: 507 agaccaaaagtggattttctctgggatctaaaacagaagaatctaaacctgcctctaaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 agaccaaaagtggattttctctgggatctaaaacagaagaatctaaacctgcctctaaaa 2096
Query: 567 tgggattttctctgggatccttgaacacgaatgctgacgataccgaatccaagcctgggt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2097 tgggattttctctgggatccttgaacacgaatgctgacgataccgaatccaagcctgggt 2156
Query: 627 tttcttttggcaataagactgaagataccaagtcagcttccaaagcggccttttcgttcg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2157 tttcttttggcaataagactgaagataccaagtcagcttccaaagcggccttttcgttcg 2216
Query: 687 ataacaagactgacgggtcaaagtcagaatcaaaaccatcttttgctttagggtccaaca 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2217 ataacaagactgacgggtcaaagtcagaatcaaaaccatcttttgctttagggtccaaca 2276
Query: 747 cctcagaaaataaagccgatcctagccccgcattctcgttaggagcgaaacctaccgata 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 cctcagaaaataaagccgatcctagccccgcattctcgttaggagcgaaacctaccgata 2336
Query: 807 gcanatcatctgatactaaagacgattcgaagcctgcatttagcttttgaagt-aacctg 865
||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 2337 gcaaatcatctgatactaaggacgattcgaagcctgcatttagctttggaagtaaacctg 2396
Query: 866 ccgatagcagaacatttgacactaaggttgattcaaagcctgcttttagctttgnaagta 925
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2397 ccgatagcagaacatctgacactaaggttgattcaaagcctgcttttagctttggaagta 2456
Query: 926 aacctgncggaactaccgtttccaa 950
|||||| | |||||||| ||||||
Sbjct: 2457 aacctgcggaaactaccgcttccaa 2481
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5692
Number of Sequences: 1807
Number of extensions: 5692
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)