BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZF06RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1625 1697 0.0
>3x_Contig1625
Length = 13618
Score = 1697 bits (856), Expect = 0.0
Identities = 883/891 (99%), Gaps = 1/891 (0%)
Strand = Plus / Minus
Query: 40 tcaaccttgagacgtagcatgatttattcagttgactattcgggacgagattcctcctat 99
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5899 tcaagcttgagacgtagcatgatttattcagttgactattcgggacgagattcctcctat 5840
Query: 100 gagaattcaaatattcaattacctatgcttcctatgactgagcttaatgatgcagaatta 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5839 gagaattcaaatattcaattacctatgcttcctatgactgagcttaatgatgcagaatta 5780
Query: 160 actataaatgaatcaaaagccttatggagatttaatttagagtttggcggaaattatgac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5779 actataaatgaatcaaaagccttatggagatttaatttagagtttggcggaaattatgac 5720
Query: 220 tttagagaattaccagaaggtatgcagacagtgaaagatatagagaatattgtcaaatgt 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5719 attagagaattaccagaaggtatgcagacagtgaaagatatagagaatattgtcaaatgt 5660
Query: 280 gcaaaaactgttaatgaattcaagctgcagatttcgcagcgtttattggaatggaaaaac 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5659 gcaaaaactgttaatgaattcaagctgcagatttcgcagcgtttattggaatggaaaaac 5600
Query: 340 agatatgtcaatcacaagattctcaatatgaaatctttgataactttcctcacgatacct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5599 agatatgtcaatcacaagattctcaatatgaaatctttgataactttcctcacgatacct 5540
Query: 400 attaggcttcatgaacccaatgagttcaaattgaggttacaggaattcacattccaagcg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5539 attaggcttcatgaacccaatgagttcaaattgaggttacaggaattcacattccaagcg 5480
Query: 460 ttcgaattcaacgaaagggtggaatatcaattcaaaaaatcaaaaacgaacgaactggaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5479 ttcgaattcaacgaaagggtggaatatcaattcaaaaaatcaaaaacgaacgaactggaa 5420
Query: 520 tcacctgtactctcaaaagattttaacacaaccgacagcaatgccttggttgataacggt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5419 tcacctgtactctcaaaagattttaacacaaccgacagcaatgccttggttgataacggt 5360
Query: 580 attataccctcagaattccttctatacttggtttctatgaaacacaaactagccactaat 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5359 attataccctcagaattccttctatacttggtttctatgaaacacaaactagccactaat 5300
Query: 640 tgtgctatctacgaagtgtcgatgaaagcagccatagcgttccatgattacgaacttgct 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5299 tgtgctatctacgaagtgtcgatgaaagcagccatagcgttccatgattacgaacttgct 5240
Query: 700 atgacaacatggaagaacagaggtaaattcagaatgactgacgctttccagaaattaaca 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5239 atgacaacatggaagaacagaggtaaattcagaatgactgacgctttccagaaattaaca 5180
Query: 760 ccaggtgaaagacaacanagtgacgcaactttcgctcaactaatggtcgaatacttcacg 819
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5179 ccaggtgaaagacaacaaagtgacgcaactttcgctcaactaatggtcgaatacttcacg 5120
Query: 820 aatg-aaagatgtatcaagacgcattgagtatcattttgtcatctttaaagaccgtaaac 878
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5119 aatgaaaagatgtatcaagacgcattgagtatcattttgtcatctttaaagacggtaaac 5060
Query: 879 tggcagtattctatgggttaatccctacacagagcgttgctagctattgaa 929
|||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 5059 tggcagtattctatggttaagtccctacacagagcgttgctagctattgaa 5009
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7060
Number of Sequences: 1807
Number of extensions: 7060
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)