BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC11ZF08FM1.SCF screened BAC_end (915 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig959 1241 0.0 >3x_Contig959 Length = 3065 Score = 1241 bits (626), Expect = 0.0 Identities = 675/690 (97%), Gaps = 1/690 (0%) Strand = Plus / Plus Query: 86 ccttttacaagaggtaaaacttcagtcttgtgcaactctgattttgagggtatataattg 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2127 ccttttacaagaggtaaaacttcagtcttgtgcaactctgattttgagggtatataattg 2186 Query: 146 tacttgttatccaaaaaccgcgttgcggttctcgtataccttgcatggcaactatcacat 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2187 tacttgttatccaaaaaccgcgttgcggttctcgtataccttgcatggcaactatcacat 2246 Query: 206 attctatttttatctagctttgaccaaggcaatcgataccagataacttcaaatgttctt 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2247 attctatttttatctagctttgaccaaggcaatcgataccagataacttcaaatgttctt 2306 Query: 266 ccacacgagatacagttgcccggagtctttaccctaacgatctttctcaatcgtttggtt 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2307 ccacacgagatacagttgcccggagtctttaccctaacgatctttctcaatcgtttggtt 2366 Query: 326 gtatcttggatcgtaactccctcacagttcaaacattttaacgcagaagttggactagga 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2367 gtatcttggatcgtaactccctcacagttcaaacattttaacgcagaagttggactagga 2426 Query: 386 ctaactccattctcttctctgtacttttactttatagtctttacattgcctctattgtgt 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2427 ctaactccattctcttctctgtacttttactttatagtctttacattgcctctattgtgt 2486 Query: 446 ataaaagtgcaatccgtgtttcgacatctataccaactgaaccgttggtaatggtcacag 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2487 ataaaagtgcaatccgtgtttcgacatctataccaactgaaccgttggtaatggtcacag 2546 Query: 506 ttggggaaatccgtttcccaaaatataccttgtcattataccatgtcatggatgtatcag 565 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2547 ttggggaaatccgtttcccaaaatataccttgtcattataccatgtcatggatgtatcat 2606 Query: 566 ttttgcaactgttgcaatgacctttttttcgactttgattgtacaaatcttctcttcggt 625 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 2607 ttttgcaactgttgcaatgacctttttctcgactttgattgtacaaatcttctcttcggt 2666 Query: 626 tatcaaataccacagtaccagcacacttgagaca-ggggaaagctatcgtgggggttcca 684 |||||| |||||||||| ||||||||||||||| |||| || |||||||||||||||| Sbjct: 2667 tatcaattaccacagtattagcacacttgagacatggggttagttatcgtgggggttcca 2726 Query: 685 tcatcaaggaatgacttgatcgaaccctgcttcaacgctgtttctctttctgccttggtg 744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2727 tcatcaaggaatgacttgatcgaaccctgcttcaacgctgtttctctttctgccttggtg 2786 Query: 745 accacagaaagacactctttattcgagcac 774 || || |||||||||| |||| |||||| Sbjct: 2787 actactttaagacactctgtatttgagcac 2816 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5680 Number of Sequences: 1807 Number of extensions: 5680 Number of successful extensions: 28 Number of sequences better than 1.0e-20: 1 length of query: 915 length of database: 10,358,551 effective HSP length: 16 effective length of query: 899 effective length of database: 10,329,639 effective search space: 9286345461 effective search space used: 9286345461 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)