BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZF08RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1608 1709 0.0
>3x_Contig1608
Length = 13037
Score = 1709 bits (862), Expect = 0.0
Identities = 872/876 (99%)
Strand = Plus / Minus
Query: 45 agcttcaactccagcaatttctctagctccaaacgaatcataataacagattaatataat 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3809 agcttcaactccagcaatttctctagctccaaacgaatcataataacagattaatataat 3750
Query: 105 cactaatccattcgcactatttctttatagacataggttcaaatatttaatctgtaaaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3749 cactaatccattcgcactatttctttatagacataggttcaaatatttaatctgtaaaaa 3690
Query: 165 gataaatcacgtaattgcaagaaaaaacacgaactttagatctagtgaagagttttttat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3689 gataaatcacgtaattgcaagaaaaaacacgaactttagatctagtgaagagttttttat 3630
Query: 225 caccgccagataaagggattctgactggaagttgtgacaacaggccattgcaatgtcatt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3629 caccgccagataaagggattctgactggaagttgtgacaacaggccattgcaatgtcatt 3570
Query: 285 tcgtgcttccataaacagcacgaatgaacagaccatatggggtaaatgcttggcaactct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3569 tcgtgcttccataaacagcacgaatgaacagaccatatggggtaaatgcttggcaactct 3510
Query: 345 ttctcaaataaaccctgatgtcttcataacaatcaccgaaaatggtgtattgatatcatc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3509 ttctcaaataaaccctgatgtcttcataacaatcaccgaaaatggtgtattgatatcatc 3450
Query: 405 catgaatgcaacagacacgaccatggccaaggtacgatttcctaagtcgttctttacaga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3449 catgaatgcaacagacacgaccatggccaaggtacgatttcctaagtcgttctttacaga 3390
Query: 465 gtatcacttcgagccgaagaagattgtatttggtgaatctggagtgcagcagatcaccga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3389 gtatcacttcgagccgaagaagattgtatttggtgaatctggagtgcagcagatcaccga 3330
Query: 525 ttgtaatgacattcttcacacaatttatagtttcaaagcgaatgcaaagtatctttccct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3329 ttgtaatgacattcttcacacaatttatagtttcaaagcgaatgcaaagtatctttccct 3270
Query: 585 attatcacttaaacaagaggatacaattaaagaatacatgttaactatcgacaattgtga 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3269 attatcacttaaacaagaggatacaattaaagaatacatgttaactatcgacaattgtga 3210
Query: 645 taattgttctgaaactatagctaacaaactcataatcaaaatgaagacagcatctttgct 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3209 taattgttctgaaactatagctaacaaactcataatcaaaatgaagacagcatctttgct 3150
Query: 705 aactaaagaatatcaagttaattntgatccattggaaagtgttcagatcatattaagtct 764
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3149 aactaaagaatatcaagttaattttgatccattggaaagtgttcagatcatattaagtct 3090
Query: 765 gaaatataaacaaaaattcctttcagtatacaacaacaaaagtangggcagatcattaga 824
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3089 gaaatataaacaaaaattcctttcagtatacaacaacaaaagtaagggcagatcattaga 3030
Query: 825 tcctcggttagtggattatttcaaatctttacaaacagaattagaacatgatatgtttaa 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3029 tcctcggttagtggattatttcaaatctttacaaacagaattagaacatgatatgtttaa 2970
Query: 885 tagaagtatcgcccatgaacacaatattgtgagcac 920
|||| |||||||| ||||||||||||||||||||||
Sbjct: 2969 tagaggtatcgccaatgaacacaatattgtgagcac 2934
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7260
Number of Sequences: 1807
Number of extensions: 7260
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)