BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZF10FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1511 1449 0.0
>3x_Contig1511
Length = 8569
Score = 1449 bits (731), Expect = 0.0
Identities = 804/822 (97%), Gaps = 5/822 (0%)
Strand = Plus / Plus
Query: 88 ctcgtaacattgaatcaaagtggcctggataaatttcggtgcgttggcatggacgtattc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7394 ctcgtaacattgaatcaaagtggcctggataaatttcggtgcgttggcatggacgtattc 7453
Query: 148 agaggattcacttgcttgctttataatagatagtagatattccttggagtatttgtccga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7454 agaggattcacttgcttgctttataatagatagtagatattccttggagtatttgtccga 7513
Query: 208 ttcgaatttcatgacagaatcaaacaatgatccagagagcttgtttctgaacaaagcagc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7514 ttcgaatttcatgacagaatcaaacaatgatccagagagcttgtttctgaacaaagcagc 7573
Query: 268 gcctacggacacaccaagtgtactaccagttgatctgaaagcgtaggaaattgacgtggt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7574 gcctacggacacaccaagtgtactaccagttgatctgaaagcgtaggaaattgacgtggt 7633
Query: 328 agcggcttggtgttcatgtggaaccgctgcaatcatggcaagaagtgtaaccgttatcaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7634 agcggcttggtgttcatgtggaaccgctgcaatcatggcaagaagtgtaaccgttatcaa 7693
Query: 388 gacagaagatccaaagtgaggtaatgggagcaagatgtactgtctccatgtgctgatatc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7694 gacagaagatccaaagtgaggtaatgggagcaagatgtactgtctccatgtgctgatatc 7753
Query: 448 gggcttcattagcaacacttgtagttgcccaaggaccattagaccggtaaatttcaatag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7754 gggcttcattagcaacacttgtagttgcccaaggaccattagaccggtaaatttcaatag 7813
Query: 508 gaacccgtagtaacggccagtctttttcatgtagtatccagctccgattgaaccgaacgc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7814 gaacccgtagtaacggccagtctttttcatgtagtatccagctccgattgaaccgaacgc 7873
Query: 568 agtactgaagaaatttggtgctatacgtttacccatatctgtaggcttgagattctgaac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7874 agtactgaagaaatttggtgctatacgtttacccatatctgtaggcttgagattctgaac 7933
Query: 628 gctggaccaataaacaggtacatagaacgctagagtgacaccactcatcatacagaacca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7934 gctggaccaataaacaggtacatagaacgctagagtgacaccactcatcatacagaacca 7993
Query: 688 attcgcgaaagaatgcgcc-agtatacttctgttagtcaaaaatctgatcggcaagatgg 746
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7994 attcgcgaaag-atgcgccaagtatacttctgttagtcaaaaatctgatcggcaagatgg 8052
Query: 747 gatcatctgagatgtagagctcaacgtaaatgaaagcagttcctgattaaatagtttgct 806
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 8053 gatcatctgagatgtagagctcaacgtaaatgaaagcagttcctgataaaatag-ttgct 8111
Query: 807 actactagttacttganaatattactgttgtaagggaatctttttacaccccagggnaac 866
||||||||| |||||| |||||||||||||||| ||||||| ||||| ||||||| |||
Sbjct: 8112 actactagtaacttgaaaatattactgttgtaa-ggaatctctttaccacccaggg-aac 8169
Query: 867 ttgctaacttgaatgcgaatatagaagagacttatgataagg 908
| |||||| |||||||||||| ||| |||| |||||||||
Sbjct: 8170 tggctaacatgaatgcgaataagaaagtgactaatgataagg 8211
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4474
Number of Sequences: 1807
Number of extensions: 4474
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)