BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZF11FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig605 1532 0.0
>3x_Contig605
Length = 2275
Score = 1532 bits (773), Expect = 0.0
Identities = 821/832 (98%), Gaps = 4/832 (0%)
Strand = Plus / Minus
Query: 87 ttgatagtttcaatatcagttttgcaggtgttcagttcctgctctttgtttggttgttat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1895 ttgatagtttcaatatcagttttgcaggtgttcagttcctgctctttgtttggttgttat 1836
Query: 147 gccatcaggttacttgacctgggttcccgttagctgtcctttttatctcatacttaggga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 gccatcaggttacttgacctgggttcccgttagctgtcctttttatctcatacttaggga 1776
Query: 207 gggaaacggatatagtgtggttttcacttccacaaaattatagatctgattcaataattg 266
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 gggaaacggaaatagtgtggttttcacttccacaaaattatagatctgattcaataattg 1716
Query: 267 ttcttaatataaatcagcgccgaaactgtgatcgcctttggagaagagctttttaaacaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 ttcttaatataaatcagcgccgaaactgtgatcgcctttggagaagagctttttaaacaa 1656
Query: 327 ttcgcaacagtattctttgcagcattcgtcaactctttgttgctcattgtcattattatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1655 ttcgcaacagtattctttgcagcattcgtcaactctttgttgctcattgtcattattatt 1596
Query: 387 gaattttttctttctttttgggttttcagcattttcattatactactattggataaaatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 gaattttttctttctttttgggttttcagcattttcattatactactattggataaaatt 1536
Query: 447 acgttactgaagacatccaagctagtcaaccatttaaattagagaaagttattgccaata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 acgttactgaagacatccaagctagtcaaccatttaaattagagaaagttattgccaata 1476
Query: 507 gtcgctttgctacctctaacgcttttggaatattatcaagatttctgtattttttggcaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 gtcgctttgctacctctaacgcttttggaatattatcaagatttctgtattttttggcaa 1416
Query: 567 aatagtggagttgtttccctttttaaaagtcagctgctaagctataagtaatacacatca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 aatagtggagttgtttccctttttaaaagtcagctgctaagctataagtaatacacatca 1356
Query: 627 ctcgctcctgaaacaactgctttttgcttcttttgaaaggactaatacatctagtttcag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 ctcgctcctgaaacaactgctttttgcttcttttgaaaggactaatacatctagtttcag 1296
Query: 687 gattcctccttttcaacgccaacatagagattccttaccttaatttttctgaaatctgtg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 gattcctccttttcaacgccaacatagagattccttaccttaatttttctgaaatctgtg 1236
Query: 747 cgttctgcatctccttcagccttgtattgattcctctcaacttcttttctttttttt-ag 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1235 cgttctgcatctccttcagccttgtattgattcctctcaacttcttttcttttttttaag 1176
Query: 806 ggtattgttctattgagacacgaaactgc-actcgcaaagctatccatcattctttgncc 864
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct: 1175 ggtattgttctattgagacacg-aactgcaactcgcaaagctatccatcattctttgcca 1117
Query: 865 acaaagcgtttg-aatatacacatttcactgggcaaccccatcttttatacc 915
|||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct: 1116 acaaagcgtttgaaatatacacattcaactggcaaaccccatcttttatacc 1065
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8354
Number of Sequences: 1807
Number of extensions: 8354
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)