BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZF11RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1695 1610 0.0
>3x_Contig1695
Length = 14630
Score = 1610 bits (812), Expect = 0.0
Identities = 859/870 (98%), Gaps = 4/870 (0%)
Strand = Plus / Minus
Query: 57 gccgaatccatcatttataacttagaaccatttagttcacctcaaactggtaccatcatc 116
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6096 gccgaatccatcattcataacttagaaccatttagttcacctcaaactggtaccatcatc 6037
Query: 117 gattgcaaggaaaaaatgaccaagaaatatatcgatgcgattggttctacattgattgat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6036 gattgcaaggaaaaaatgaccaagaaatatatcgatgcgattggttctacattgattgat 5977
Query: 177 ggtgctgttaataagaaaaccaacgaaccgtggttcgtttatactctctatgcatggagt 236
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 5976 ggtgctgttaataagaaaaccaacgaaccgtggttcgtttatactc-cgatgcatggagt 5918
Query: 237 aggttttgagatttttgaaagtatcagtaaacaacttttatcccttgaagaaggtaaaga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5917 aggttttgagatttttgaaagtatcagtaaacaacttttatcccttgaagaaggtaaaga 5858
Query: 297 ttacttagtagtagaagagcagaagtatccagatgctgatttccccacggtgtctttccc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5857 ttacttagtagtagaagagcagaagtatccagatgctgatttccccacggtgtctttccc 5798
Query: 357 taacccagaagaaaaaggtgctttggatctagccgttgaatatggaaggaagaacgatac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5797 taacccagaagaaaaaggtgctttggatctagccgttgaatatggaaggaagaacgatac 5738
Query: 417 tgtcgacctaattatagccaatgatccagatgccgataggtttagtgtcgcagtaaggga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5737 tgtcgacctaattatagccaatgatccagatgccgataggtttagtgtcgcagtaaggga 5678
Query: 477 caacgatcaaaatacaactacagcttggagacaattgaccggaaacgagattggattctt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5677 caacgatcaaaatacaactacagcttggagacaattgaccggaaacgagattggattctt 5618
Query: 537 gtttgcatactatgaatgggaaaggtacaagcatagtcctatcgacgaaccgcttgcgat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5617 gtttgcatactatgaatgggaaaggtacaagcatagtcctatcgacgaaccgcttgcgat 5558
Query: 597 gttgaactcaactgtttcttcacagatgatcaagcgtatggctgaaatagaagggttcca 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5557 gttgaactcaactgtttcttcacagatgatcaagcgtatggctgaaatagaagggttcca 5498
Query: 657 ttacgaggatacgctaactgggttcaaatggcttggaaatcgcgcacttgagctagaaca 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5497 ttacgaggatacgctaactgggttcaaatggcttggaaatcgcgcacttgagctagaaca 5438
Query: 717 agagggatactatacgccattcgcatacgaggaagctatagggtacatgttntcatctgt 776
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5437 agagggatactatacgccattcgcatacgaggaagctatagggtacatgttttcatctgt 5378
Query: 777 ggttcacgacaaagacggaatcagcgctgccatcgtctttctt-aagcctattcg-agtg 834
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 5377 ggttcacgacaaagacggaatcagcgctgccatcgtctttcttcaagcctattcgaagtg 5318
Query: 835 gcgtgcgagtggtcagactgtgctggatattttggcc-cagcatcacttaagtacggcca 893
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5317 gcgtgcgagtggtcagactgtgctggatattttggccacagcatcacttaagtacggcca 5258
Query: 894 cttttaagagttnaaacggtattatatcgt 923
|||| ||||||| || |||||||||||||
Sbjct: 5257 ctttaaagagtttaacgggtattatatcgt 5228
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5370
Number of Sequences: 1807
Number of extensions: 5370
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)