BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZF12FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1427 1548 0.0
>3x_Contig1427
Length = 10253
Score = 1548 bits (781), Expect = 0.0
Identities = 847/861 (98%), Gaps = 6/861 (0%)
Strand = Plus / Minus
Query: 90 aatttactcgaagtcttgtgatccagtaaaataggagacacctttttgaagtttcgtcca 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6767 aatttactcgaagtcttgtgatccagtaaaataggagacacctttttgaagtttcgtcca 6708
Query: 150 tagattcatagaactctgtcctggttttgtacgaataaaaaggtaaccgttggtgtaaaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6707 tagattcatagaactctgtcctggttttgtacgaataaaaaggtaaccgttggtgtaaaa 6648
Query: 210 catgaaatgcatttttttctaatgtataatcgagaagattcaaagaagagcggagaggcc 269
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6647 catgaaatgcaatattttctaatgtataatcgagaagattcaaagaagagcggagaggcc 6588
Query: 270 tccatatgtttagcatttgtcttcccgttatcgaaaatgctgttgcgtgagtgtaacccc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6587 tccatatgtttagcatttgtcttcccgttatcgaaaatgctgttgcgtgagtgtaacccc 6528
Query: 330 atctgtctttttttttgctactctggttataatcgactcgagagagttcatcttccacat 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6527 atctgtctttttttttgctactctggttataatcgactcgagagagttcatcttccacat 6468
Query: 390 cataatcatgtcccttgtgacatctatcaatcaagtagccccacgaggaagagtgtattt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6467 cataatcatgtcccttgtgacatctatcaatcaagtagccccacgaggaagagtgtattt 6408
Query: 450 cgtatcctgacaagatatcaggatcgaaaaacctcactaaatcttctaatgcatatatca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6407 cgtatcctgacaagatatcaggatcgaaaaacctcactaaatcttctaatgcatatatca 6348
Query: 510 tttccaattcatcgtaataagcagttatatgaacactaggatcggcagttttccatgaat 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6347 tttccaattcatcgtaataagcagttatatgaacactaggatcggcagttttccatgaat 6288
Query: 570 tttctgtcgagacatcgtctagaaatatcaaaacaccttcttgagtaatatccaggtcga 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6287 tttctgtcgagacatcgtctagaaatatcaaaacaccttcttgagtaatatccaggtcga 6228
Query: 630 atggaaaagttccatcttgcactttccaaaatatcatcctgacagcatcatatttaggat 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6227 atggaaaagttccatcttgcactttccaaaatatcatcctgacagcatcatatttaggat 6168
Query: 690 ctggaaacttatcttcacgagtattgacgtgaatttccatggtgaaatgggtcattctat 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6167 ctggaaacttatcttcacgagtattgacgtgaatttccatggtgaaatgggtcattctat 6108
Query: 750 tagaagcgttattatttttttctattttattgctcttgaacttgtattcgaatggtagtt 809
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6107 tagaagcgttattatttttttctattttattgctcttgaacttgtatccgaatggtagtt 6048
Query: 810 cttggtgttttccccttcaccatcgagaatttaccttttgaaaggcttcatcgcattggc 869
| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6047 c-tggtgttttcccctccaccatcgagaatttacc-tttgaaaggcttcatcgcattggc 5990
Query: 870 tttttcttttaaaaagaggcctttggtcttatatatttccatctgcttcttgcat-taca 928
| ||||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5989 -tattctttt-aaaagacggctttggtcttatatatttccatctgcttcttgcatataca 5932
Query: 929 cttcctggagaa-ttaatgtt 948
||||||| |||| ||||||||
Sbjct: 5931 cttcctgaagaagttaatgtt 5911
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8194
Number of Sequences: 1807
Number of extensions: 8194
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)