BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZF12RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1433 1586 0.0
>3x_Contig1433
Length = 8270
Score = 1586 bits (800), Expect = 0.0
Identities = 889/909 (97%), Gaps = 8/909 (0%)
Strand = Plus / Plus
Query: 44 ctttctacaatactaagtgaagtt-tgcttttggcaagtttaaaccacagatatgtggtt 102
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4222 ctttctacaatactaagtgaagtcatgcttttggcaagtttaaaccacagatatgtggtt 4281
Query: 103 agatattatgctgcttggttagaagaagaacaagccaatcatgatagtactgctattgaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282 agatattatgctgcttggttagaagaagaacaagccaatcatgatagtactgctattgaa 4341
Query: 163 agtgaagatgaattcagtgatgattcatatagtttcagtagctcagacgggctggtttta 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 4342 agtgaagatgaattcagtgatgattcatatagtttcagtagctcagacgggcagggttca 4401
Query: 223 ataaataagtcattgacaggtttgaatagcaataactgggactttatatcgaactctttc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4402 ataaataagtcattgacaggtttgaatagcaataactgggactttatatcgaactctttc 4461
Query: 283 caaggatcttatcctgaaattgttttcggcaactcctccgatgaagatgaagatgaagct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4462 caaggatcttatcctgaaattgttttcggcaactcctccgatgaagatgaagatgaagct 4521
Query: 343 gaagatgaagatgcaacaggcgtttcaaaagcatctgcaagtgaggtaactggtttagac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4522 gaagatgaagatgcaacaggcgtttcaaaagcatctgcaagtgaggtaactggtttagac 4581
Query: 403 tcctcaaagaatgatactctacaggaagatggtattggagatatgaagttcggtagagat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4582 tcctcaaagaatgatactctacaggaagatggtattggagatatgaagttcggtagagat 4641
Query: 463 aaacgttctaaaatgaaatcattatctgttaaaagtcctcgtaaaagtactctattcatt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4642 aaacgttctaaaatgaaatcattatctgttaaaagtcctcgtaaaagtactctattcatt 4701
Query: 523 cagatggaatactgtgaaaacagaactctttatgacttgattcacactgagagtctaaac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4702 cagatggaatactgtgaaaacagaactctttatgacttgattcacactgagagtctaaac 4761
Query: 583 aaccaaaaagaggagtactggagacttttccgtcagattttagaagcattgagctatatt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4762 aaccaaaaagaggagtactggagacttttccgtcagattttagaagcattgagctatatt 4821
Query: 643 cactctcaaggaattattcatagagacttgaaacccatgaatattttcattgatgaatct 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4822 cactctcaaggaattattcatagagacttgaaacccatgaatattttcattgatgaatct 4881
Query: 703 cgtaacattaaaatcggtgattttggtttggcaaagaatgttcagatatcccaagatacc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4882 cgtaacattaaaatcggtgattttggtttggcaaagaatgttcagatatcccaagatacc 4941
Query: 763 ttaagaagggactctnttactagtgcaggaagttcangtgatctaaacctcagc-atcgg 821
||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct: 4942 ttaagaagggactcttttactagtgcaggaagttcaggtgatct-aacctcagcaatcgg 5000
Query: 822 gactggcttatatgttgcatcggnaataat-accagtcatgggtactat-atg-aaaagt 878
||||| |||||||||||||||| |||||| ||||||||||| ||||| ||| ||||||
Sbjct: 5001 gactgctttatatgttgcatcggaaataataaccagtcatggtaactataatgaaaaagt 5060
Query: 879 tgacatgtactcattaggtatttatc-tttttgaaatgatttacccttttgatacaggaa 937
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 5061 tgacatgtactcattaggta-ttatcttttttgaaatgatttacccttttgatacaggaa 5119
Query: 938 tgggaagag 946
||| |||||
Sbjct: 5120 tggaaagag 5128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8506
Number of Sequences: 1807
Number of extensions: 8506
Number of successful extensions: 183
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)