BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG01FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 515 e-146
>3x_Contig1772
Length = 25851
Score = 515 bits (260), Expect = e-146
Identities = 285/292 (97%), Gaps = 1/292 (0%)
Strand = Plus / Minus
Query: 87 ctaatccagtggccaaatattggcacacattagtgtaccaaatagatcactacctctacg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6514 ctaatccagtggccaaatattggcacacattagtgtaccaaatagatcactacctctacg 6455
Query: 147 gcgaccaagtttctaaggttcccgaaggtactgtctttgatacatacgtccatgccccac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6454 gcgaccaagtttctaaggttcccgaaggtactgtctttgatacatacgtccatgccccac 6395
Query: 207 cggggaaaaccatatgtgtgccggtgcgtgtggaaccaaaagtgtattttgccactgaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6394 cggggaaaaccatatgtgtgccggtgcgtgtggaaccaaaagtgtattttgccactgaaa 6335
Query: 267 gaactttactttcatggatatctatcggacttgtttggggccgtgtgtccacaagtttct 326
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 6334 gaactttactttcatggatatctatcggacttgttttgggcggtgtgtccacaagtttct 6275
Query: 327 taacttatggtaccccacccacaatggccgcctcttactggtttctttttga 378
||||||||||||| ||| ||||||||| |||||| |||||||||||| ||||
Sbjct: 6274 taacttatggtacgccaaccacaatggtcgcctc-tactggtttcttcttga 6224
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,875
Number of Sequences: 1807
Number of extensions: 15875
Number of successful extensions: 156
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)