BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG01RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1590 0.0
>3x_Contig1784
Length = 28126
Score = 1590 bits (802), Expect = 0.0
Identities = 849/864 (98%), Gaps = 1/864 (0%)
Strand = Plus / Plus
Query: 43 ctttgtatctgtataaaactcgtggtaaaggtcatggacgcttttgggacaatctgtcat 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7243 ctttgtatctgtataaaactcgtggtaaaggtcatggacgcttttgggacaatctgtcat 7302
Query: 103 tataaggtgatagttctcaacattgttcagatcttttgcgccgagaggtctgattttgct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7303 tataaggtgatagttctcaacattgttcagatcttttgcgccgagaggtctgattttgct 7362
Query: 163 cgagtgttgtgatttcgctaccttgtaccttgatggcatttctcgcgatgcttttttcgc 222
||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 7363 cgagtgttgtgatttcgctaccttgtaccttgatggcatttctcgcgatgcgttctccgc 7422
Query: 223 ttctctgctgagactactgaaaagaatttcatttttaaattcttctttgaaaacttttgg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7423 ttctctgctgagactactgaaaagaatttcatttttaaattcttctttgaaaacttttgg 7482
Query: 283 cccttccgaaatgtcagcttcagtctcatcaattccaagtagaggtagaggatcttcatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7483 cccttccgaaatgtcagcttcagtctcatcaattccaagtagaggtagaggatcttcatt 7542
Query: 343 ctctttatttacgtcaaaatccacttcttgttcctcggttaaaaactggttattcatatc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7543 ctctttatttacgtcaaaatccacttcttgttcctcggttaaaaactggttattcatatc 7602
Query: 403 caaatcatgagctaaaagatgtgttttaatgattcctaaatcaacaataatcccagtatg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7603 caaatcatgagctaaaagatgtgttttaatgattcctaaatcaacaataatcccagtatg 7662
Query: 463 ctgttgttgtattaaatctaacttagattttaacagggcaatttgaccattgacactttg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7663 ctgttgttgtattaaatctaacttagattttaacagggcaatttgaccattgacactttg 7722
Query: 523 acacttgctattacacactgcgtcgcataaaacgttccaatcagtttgtaaagtgtctac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7723 acacttgctattacacactgcgtcgcataaaacgttccaatcagtttgtaaagtgtctac 7782
Query: 583 tctgctttggaatgtatgaattattcgttcaatattctgtggcatctcatttgattctcg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7783 tctgctttggaatgtatgaattattcgttcaatattctgtggcatctcatttgattctcg 7842
Query: 643 gcgtcttcgcaatgcaatcaaaacttgaaaatactaattgattcagatgntaataatagt 702
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7843 gcgtcttcgcaatgcaatcaaaacttgaaaatactaattgattcagatgtaaataatagt 7902
Query: 703 gtatatactaaactacgaataagcacgaataacagaggtgatgatgtgaaagtttgtgaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7903 gtatatactaaactacgaataagcacgaataacagaggtgatgatgtgaaagtttgtgaa 7962
Query: 763 atctgtgggttatattatatttgacatatgtttaatatagtaattaaatctttttgtgac 822
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7963 atctgtggtttatataatatttgacatatgtttaatatagtaattaaatctttttgtgac 8022
Query: 823 actttnattttttcgtttttccttttccttcactgactgcatggacgccccagttcccac 882
||||| | |||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct: 8023 actttta-tttttcgtttttccttttccttcactgactgcatggacgcaccagtccacac 8081
Query: 883 agaaaaaccacgcaacctaaatgt 906
|||||||||| |||||||||||
Sbjct: 8082 agaaaaaccagcaaacctaaatgt 8105
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7757
Number of Sequences: 1807
Number of extensions: 7757
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)