BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZG02FM1.SCF screened BAC_end
         (923 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1404                                                        1467   0.0  

>3x_Contig1404 
          Length = 8096

 Score = 1467 bits (740), Expect = 0.0
 Identities = 803/820 (97%), Gaps = 3/820 (0%)
 Strand = Plus / Plus

                                                                        
Query: 88   ttccctcaaattaccgacattgaaaacaaaacaaatcgttgggtttcaaaaatttatcag 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324  ttccctcaaattaccgacattgaaaacaaaacaaatcgttgggtttcaaaaatttatcag 383

                                                                        
Query: 148  acatcttttcgaatatctcagctgactttgcacatgctaattgaaaaatatatgatgctt 207
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384  acatcttttcgaatatctcagctgactttgcacatgctaattgaaaaatatatgattctt 443

                                                                        
Query: 208  ttggacctacttgttttgtcaattgcgggtttagaaacatcatctgaaataaattcgttg 267
            ||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444  ttggacctacaagacttgtcaattgcgggtttagaaacatcatctgaaataaattcgttg 503

                                                                        
Query: 268  ttatctgccaagttctcatcagaaactctttcattcaatttgttgtatcttgaccgtatc 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504  ttatctgccaagttctcatcagaaactctttcattcaatttgttgtatcttgaccgtatc 563

                                                                        
Query: 328  atctcaagaattctgcttgagaaagttacagcaaatttctttggcacagaaaatgaaaat 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564  atctcaagaattctgcttgagaaagttacagcaaatttctttggcacagaaaatgaaaat 623

                                                                        
Query: 388  atcaggttcttcacttcaaatattggtagtgtagtactagactcatcagacctaacctta 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624  atcaggttcttcacttcaaatattggtagtgtagtactagactcatcagacctaacctta 683

                                                                        
Query: 448  accgaaatgatgaagcatgctcgggccctcctagcttcaatagatgatatgaaagccatt 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684  accgaaatgatgaagcatgctcgggccctcctagcttcaatagatgatatgaaagccatt 743

                                                                        
Query: 508  actcccgaccatgattcagaaaaaaaaaatggtcacgtcgacttagtatgggttctctcc 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744  actcccgaccatgattcagaaaaaaaaaatggtcacgtcgacttagtatgggttctctcc 803

                                                                        
Query: 568  ctgaaggttggatcattgcaacttcaaacttcggcttttgttccttttattatacgcatt 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804  ctgaaggttggatcattgcaacttcaaacttcggcttttgttccttttattatacgcatt 863

                                                                        
Query: 628  ctgatcagtggtttagacttcaatttcaaaaatctttctggtatttcaattattgtgaat 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864  ctgatcagtggtttagacttcaatttcaaaaatctttctggtatttcaattattgtgaat 923

                                                                        
Query: 688  tatacagagcttttgttggacttctattttaaccagttgaaattgttgcgaatctccaat 747
            |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 924  tatacagagcttttgttggacttctatttttaccagttgatattgttgcgaatctccaat 983

                                                                        
Query: 748  tctgtcacgaaggtagattatagaagtaatacttttgctgactgacattggattagacac 807
            |||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||
Sbjct: 984  tctgtcacgaaggtagattatagatgttatac-tttgctgactgatattggattagacac 1042

                                                                        
Query: 808  tgacatcgtgaaattgacactatcagatacccgtgtttacatntgaagaacttaccgaca 867
            ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct: 1043 tgacatcgtgaaattgacactatcagataaccgtgtttacat-tgaagaactcaccgaca 1101

                                                    
Query: 868  gtcttaatggtacggtatctgaacttaattaggattttca 907
            |||| ||||||||||||||||||| |||||| ||||||||
Sbjct: 1102 gtctaaatggtacggtatctgaac-taattaagattttca 1140


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9029
Number of Sequences: 1807
Number of extensions: 9029
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)