BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG02RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1669 0.0
>3x_Contig1590
Length = 13653
Score = 1669 bits (842), Expect = 0.0
Identities = 860/865 (99%), Gaps = 1/865 (0%)
Strand = Plus / Minus
Query: 43 gctttgtcactttatccaaaatttcgttgaccactaagattgtgtcatctgttatcaata 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13282 gctttgtcactttatccaaaattgcgttgaccactaagattgtgtcatctgttatcaata 13223
Query: 103 tgactatattatacaagcaatcgaatagcaaatggttcacctcattatacttgaagaatg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13222 tgactatattatacaagcaatcgaatagcaaatggttcacctcattatacttgaagaatg 13163
Query: 163 gatacaatgaaatttatgcttatcaaatgtggcagtttatctacaatttac-catcatta 221
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 13162 gatacaatgaaatttatgcttatcaaatgtggcagtttatctacaatttacacagcacta 13103
Query: 222 tcaattatattcttttggtattgcaatgctactaccattttgtcaaatgtgactcaggta 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13102 tcaattatattcttttggtattgcaatgctactaccattttgtcaaatgtgactcaggta 13043
Query: 282 gttacaatacaataacctttgggttgttgttgttggctattcaaatttggtgcaacactg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13042 gttacaatacaataacctttgggttgttgttgttggctattcaaatttggtgcaacactg 12983
Query: 342 agatcttccatagtattaaagaatttggctggttttatggtgatttcttcctacctaatt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12982 agatcttccatagtattaaagaatttggctggttttatggtgatttcttcctacctaatt 12923
Query: 402 taattgacaaaaggaaattgaagaacgatggtatttatagatacttgaataatcctgagc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12922 taattgacaaaaggaaattgaagaacgatggtatttatagatacttgaataatcctgagc 12863
Query: 462 gtgtgtttggtgttgcaggtatctgggggaccgtcttaattaacaatttttcaaattgga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12862 gtgtgtttggtgttgcaggtatctgggggaccgtcttaattaacaatttttcaaattgga 12803
Query: 522 atctctggttagccactacatggacgatgttcaattggttcactgttaaattcatcgaaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12802 atctctggttagccactacatggacgatgttcaattggttcactgttaaattcatcgaaa 12743
Query: 582 caccacatttgttaaaggtttatggaaccaaaccaacatctagtggtttcgaaaagactt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12742 caccacatttgttaaaggtttatggaaccaaaccaacatctagtggtttcgaaaagactt 12683
Query: 642 tgaccaagtacaaatttggtaaggatttcaagagtttaatcgataaagttgatcaattgc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12682 tgaccaagtacaaatttggtaaggatttcaagagtttaatcgataaagttgatcaattgc 12623
Query: 702 tcgatgattatttattcactagtctagtgccaaaacaaagcgttgctgaagcagatcgtg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12622 tcgatgattatttattcactagtctagtgccaaaacaaagcgttgctgaagcagatcgtg 12563
Query: 762 agggagattgggaatcgattatcaatatgcttttgattagagagcanacggtgaaaaatt 821
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 12562 agggagattgggaatcgattatcaatatgcttttgattagagagcaaacggtgaaaaatt 12503
Query: 822 tgcaaggcaccggccactttaacttggatatcgtcaacatcaatgacgaaaatacgattc 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12502 tgcaaggcaccggccactttaacttggatatcgtcaacatcaatgacgaaaatacgattc 12443
Query: 882 ggattccagaagaaatcgaaatcaa 906
|||||||||||||||||||||||||
Sbjct: 12442 ggattccagaagaaatcgaaatcaa 12418
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9156
Number of Sequences: 1807
Number of extensions: 9156
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)