BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG03FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1542 0.0
>3x_Contig1784
Length = 28126
Score = 1542 bits (778), Expect = 0.0
Identities = 831/842 (98%), Gaps = 5/842 (0%)
Strand = Plus / Minus
Query: 86 ctcctctctttcatcaccaatagatgattctgccaattgtttagacacatcttcagtgac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14596 ctcctctctttcatcaccaatagatgattctgccaattgtttagacacatcttcagtgac 14537
Query: 146 atcgccataccatttggtgtacaattctgggtggttttcttgtaaccaagctttacaacg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14536 atcgccataccatttggtgtacaattctgggtggttttcttgtaaccaagctttacaacg 14477
Query: 206 tttgaatttaccttttaattcacagtattcagcaggaaagtcacacacaccacagtatat 265
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14476 tttgaatttaccggaaaattcacagtattcagcaggaaagtcacacacaccacagtatat 14417
Query: 266 aacgttagtgagaggcattctgtatattcttctgtctctttaattaattctaacgtataa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14416 aacgttagtgagaggcattctgtatattcttctgtctctttaattaattctaacgtataa 14357
Query: 326 atctcaaactgaatcaagcgtaacttaattacacgtaatgttattctgaacacacctcat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14356 atctcaaactgaatcaagcgtaacttaattacacgtaatgttattctgaacacacctcat 14297
Query: 386 ctcatgcattagtgattttctgtttcaatatttttttcaatatttcactgtaaagatcga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14296 ctcatgcattagtgattttctgtttcaatatttttttcaatatttcactgtaaagatcga 14237
Query: 446 ttcactttcttcagtaactacgtaatctactacttacatatactaagtgtttacttagac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14236 ttcactttcttcagtaactacgtaatctactacttacatatactaagtgtttacttagac 14177
Query: 506 atgcacaaatagcggcgaactttggttacactcacactgaatacacttctttggaatggc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14176 atgcacaaatagcggcgaactttggttacactcacactgaatacacttctttggaatggc 14117
Query: 566 aacgtatgatgattttgctactgatactgtaataataacgtcaaagacaaaggacgtgtg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14116 aacgtatgatgattttgctactgatactgtaataataacgtcaaagacaaaggacgtgtg 14057
Query: 626 ctccaagcccttgtttgatgagatcgtaaataaggtgcaagaatgtgtggtggatactcg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14056 ctccaagcccttgtttgatgagatcgtaaataaggtgcaagaatgtgtggtggatactcg 13997
Query: 686 acagatttacggtgcggatgccgtgcgtgtcattacacttcctggattcaagagaatatt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13996 acagatttacggtgcggatgccgtgcgtgtcattacacttcctggattcaagagaatatt 13937
Query: 746 ggtaacatcgcctaatattgaggcgagccgtgaagtgaaatccttg-acccattattccc 804
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 13936 ggtaacatcgcctaatattgaggcgagccgtgaagtgaaatccttgaacccattattccc 13877
Query: 805 tgattgtaaattttgggttctccatcacgaatcacgtggctgaatcgaattcacaggctg 864
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13876 tgattgtaaa-tttgggttctccatcacgaatcacgtggctgaatcgaattcacaagctg 13818
Query: 865 gattt-cacacgcttgcgctgacactgtgatgaatcacctttaaagtt-cccctgcccag 922
||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 13817 gatttccacacgctggcgctgacactgtgatgaatcacc-ttaaagttccccctgcccag 13759
Query: 923 ac 924
||
Sbjct: 13758 ac 13757
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6388
Number of Sequences: 1807
Number of extensions: 6388
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)