BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZG03RM1.SCF screened BAC_end
         (933 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig977                                                          866   0.0  
3x_Contig498                                                          682   0.0  

>3x_Contig977 
          Length = 3887

 Score =  866 bits (437), Expect = 0.0
 Identities = 440/441 (99%)
 Strand = Plus / Plus

                                                                        
Query: 51   aagaattggaggcacaatctgccaaagagttacaaaagagaattcaagaacttgaaagaa 110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3253 aagaattggaggcacaatctgccaaagagttacaaaagagaattcaagaacttgaaagaa 3312

                                                                        
Query: 111  aggctattgaattgaagatgaaggaaaagctactaagacaaaactcacatagtcaatctc 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3313 aggctattgaattgaagatgaaggaaaagctactaagacaaaactcacatagtcaatctc 3372

                                                                        
Query: 171  aagaatctatccagactaatacaactaaacaaaattcaacttctggaggtgcttacatta 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3373 aagaatctatccagactaatacaactaaacaaaattcaacttctggaggtgcttacatta 3432

                                                                        
Query: 231  agaaagaggaaacctataacgatttagcttcgataatcagcaaaaaagaatgaattcagt 290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3433 agaaagaggaaacctataacgatttagcttcgataatcagcaaaaaagaatgaattcagt 3492

                                                                        
Query: 291  cttgatatctttctttggcatttttgtaagtcgaagtgtttggttcctgaaacgatttca 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3493 cttgatatctttctttggcatttttgtaagtcgaagtgtttggttcctgaaacgatttca 3552

                                                                        
Query: 351  tatgtaatttaaacaatattgattattttgtatattgcaaacggtcacgtctagattgat 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3553 tatgtaatttaaacaatattgattattttgtatattgcaaacggtcacgtctagattgat 3612

                                                                        
Query: 411  ctgctacctgtttccaaatttgatgagtttaagatggtgatgtaaaaatcagaaaaatat 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3613 ctgctacctgtttccaaatttgatgagtttaagatggtgatgtaaaaatcagaaaaataa 3672

                                 
Query: 471  acgtactgttacaggtatata 491
            |||||||||||||||||||||
Sbjct: 3673 acgtactgttacaggtatata 3693


>3x_Contig498 
          Length = 2351

 Score =  682 bits (344), Expect = 0.0
 Identities = 404/420 (96%), Gaps = 3/420 (0%)
 Strand = Plus / Plus

                                                                       
Query: 505 taataatgagttaaggtattttcgtgccacttatcaataaatggaatttatctgttcaga 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 taataatgagttaaggtattttcgtgccacttatcaataaatggaatttatctgttcaga 591

                                                                       
Query: 565 tgacatagtattatgagataaaaaagattggtgaaaaatttatgttcatccagtgcttca 624
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 592 tgacatagtattatgagataaaaaagattggtggggaatttatgttcatccagtgcttca 651

                                                                       
Query: 625 agataaaaaatagctagtgtaactggagagaactaagaaaaccgaaaaatgcaaaataat 684
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agatgggaaatagctagtgtaactggagagaactaagaaaaccgaaaaatgcaaaataat 711

                                                                       
Query: 685 gttcccgatggcaattaaaaacatcaagaaacaacattcattcagcgacgatgagaaaag 744
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gttcccgatggcaattaaaaacatcaagaaacaacattcattcagcgacgatgagaaaag 771

                                                                       
Query: 745 gcactgg-gggaaataataggaaaagagatttaaccgaattgaaaaatggttgcaaaata 803
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gcactggcgggaaataataggaaaagagatttaaccgaattgaaaaatggttgcaaaata 831

                                                                       
Query: 804 acattaaagagttgggaaacagacatatttgatcaataaagacttcaagtgcgaacataa 863
           ||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 832 acattaaagagttggaaacaagacataattgatcaataaagacttcaagtgcgaacataa 891

                                                                       
Query: 864 gtcattttaacaaacgc-aaaaaggggtatgacgacgtaaatatgaaatgttagaaaaag 922
           ||||||||||| ||||| |||||||| |||||||||||||||||||| ||| ||||||||
Sbjct: 892 gtcattttaac-aacgcaaaaaagggttatgacgacgtaaatatgaagtgtaagaaaaag 950



 Score =  234 bits (118), Expect = 3e-61
 Identities = 262/310 (84%)
 Strand = Plus / Plus

                                                                       
Query: 60  aggcacaatctgccaaagagttacaaaagagaattcaagaacttgaaagaaaggctattg 119
           ||||||||||| ||||| | | |||| | | ||||||| ||||| ||| |||  ||||| 
Sbjct: 87  aggcacaatctcccaaacactcacaatatataattcaacaacttaaaataaattctattc 146

                                                                       
Query: 120 aattgaagatgaaggaaaagctactaagacaaaactcacatagtcaatctcaagaatcta 179
           |||| || || ||  |||||||||||| |||||||||||||| |||||||||| ||||||
Sbjct: 147 aattcaatattaataaaaagctactaacacaaaactcacatattcaatctcaacaatcta 206

                                                                       
Query: 180 tccagactaatacaactaaacaaaattcaacttctggaggtgcttacattaagaaagagg 239
           |||| |||||||||||||||||||||||||||||| || ||||||||||||| ||| |  
Sbjct: 207 tccacactaatacaactaaacaaaattcaacttctagacgtgcttacattaacaaataaa 266

                                                                       
Query: 240 aaacctataacgatttagcttcgataatcagcaaaaaagaatgaattcagtcttgatatc 299
           ||||||||||| ||||| |||| ||||||||||||||| ||| |||||| |||| |||||
Sbjct: 267 aaacctataaccatttatcttccataatcagcaaaaaataatcaattcactcttaatatc 326

                                                                       
Query: 300 tttctttggcatttttgtaagtcgaagtgtttggttcctgaaacgatttcatatgtaatt 359
           ||||||| |||||||| ||| || || | ||| |||||| |||| || |||||| |||  
Sbjct: 327 tttctttagcatttttctaattctaattttttcgttcctcaaaccatctcatatataaca 386

                     
Query: 360 taaacaatat 369
           ||||||||||
Sbjct: 387 taaacaatat 396


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,583
Number of Sequences: 1807
Number of extensions: 13583
Number of successful extensions: 1285
Number of sequences better than 1.0e-20: 2
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)