BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG06FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1598 0.0
>3x_Contig1502
Length = 14970
Score = 1598 bits (806), Expect = 0.0
Identities = 835/841 (99%), Gaps = 3/841 (0%)
Strand = Plus / Minus
Query: 87 tggtagatgacattatagccttagtggcctgtgctgtagcttcgcgtacttcaggaactg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9479 tggtagatgacattatagccttagtggcctgtgctgtagcttcgcgtacttcaggaactg 9420
Query: 147 gatctcccaaattctttagaatgttcggtagaatctcaatcacgtatggctcgaaaaact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9419 gatctcccaaattctttagaatgttcggtagaatctcaatcacgtatggctcgaaaaact 9360
Query: 207 tccctagaacaagagataggcactcgaacccatatgcaaccgattcacggcagcgtgggt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9359 tccctagaacaagagataggcactcgaacccatatgcaaccgattcacggcagcgtgggt 9300
Query: 267 cttttttatcttcggatccttcgattaagctgcgaataacatcaaagtctgaaagagcag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9299 cttttttatcttcggatccttcgattaagctgcgaataacatcaaagtctgaaagagcag 9240
Query: 327 aaataccgtacccctttactaaaccagcaataccccaagcagcacctcttctaatttggt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9239 aaataccgtacccctttactaaaccagcaataccccaagcagcacctcttctaatttggt 9180
Query: 387 ttggtgcaggtgagtcaaataatgcttgcaaagagaagtcaatgtattcttgggcagagc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9179 ttggtgcaggtgagtcaaataatgcttgcaaagagaagtcaatgtattcttgggcagagc 9120
Query: 447 tctggaataagggaaccaaagcagataaacattttgaaattgatttttgtaattcttctg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9119 tctggaataagggaaccaaagcagataaacattttgaaattgatttttgtaattcttctg 9060
Query: 507 atggagtttgaagggagcttaacaaacgctcagcaatggttctaattcttggatcatctt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9059 atggagtttgaagggagcttaacaaacgctcagcaatggttctaattcttggatcatctt 9000
Query: 567 gcttcaagtgtctagctagagaaccatatagaataacgacattttctttcatcaaaacat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8999 gcttcaagtgtctagctagagaaccatatagaataacgacattttctttcatcaaaacat 8940
Query: 627 cagtagaagaagacaaaaagttttcaaatattggcatcaaatcttgcaaatacttactac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8939 cagtagaagaagacaaaaagttttcaaatattggcatcaaatcttgcaaatacttactac 8880
Query: 687 cgtggtagttaatgatttcgataccagcttctttcatctcctggcgaacaatttcctctc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8879 cgtggtagttaatgatttcgataccagcttctttcatctcctggcgaacaatttcctctc 8820
Query: 747 tatcacctaatgctccagaatcaatgaggaaatgtacgaattcaacaacagcaccaggac 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8819 tatcacctaatgctccagaatcaatgaggaaatgtacgaattcaacaacagcaccaggac 8760
Query: 807 tggaactaaatgcacggcanagttctttcagtgcaatggcagtagtactttttgcttccc 866
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 8759 tggaactaaatgcacggcaaagttctttcagtgcaatggcagtagtacttcttgcttccc 8700
Query: 867 aa-ggttcttttgct-tgttgcactgatttt-accaaaccgtagtcatcaagaatatcct 923
|| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 8699 aagggtccttttgctctgttgcactgattttaaccaaaccgtagtcatcaagaatatcct 8640
Query: 924 t 924
|
Sbjct: 8639 t 8639
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7107
Number of Sequences: 1807
Number of extensions: 7107
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)