BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG06RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig948 1659 0.0
>3x_Contig948
Length = 3578
Score = 1659 bits (837), Expect = 0.0
Identities = 876/884 (99%), Gaps = 4/884 (0%)
Strand = Plus / Minus
Query: 47 gcttgatagaaacttcctcctgaattttgactctgaagtcaccagaaccatttaaattcg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 gcttgatagaaacttcctcctgaattttgactctgaagtcaccagaaccatttaaattcg 1017
Query: 107 gtacaaggtttggtccgcataatttcgtctcgacgtgtttcttgggtcttcccctcggtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 gtacaaggtttggtccgcataatttcgtctcgacgtgtttcttgggtcttcccctcggtt 957
Query: 167 tcttcaccaaatttaccttatgttgtttgatatcacatttattattcgaatgtatcaatt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tcttcaccaaatttaccttatgttgtttgatatcacatttattattcgaatgtatcaatt 897
Query: 227 tactatactgtcgcaaatccataccaacagaggtgttagggttgagattagcacctgtct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tactatactgtcgcaaatccataccaacagaggtgttagggttgagattagcacctgtct 837
Query: 287 tagacattatcaatgtcagtataaccttaaaagtacccctgtttttttacgtcgaaataa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tagacattatcaatgtcagtataaccttaaaagtacccctgtttttttacgtcgaaataa 777
Query: 347 gatgctgaatagcaacaaaggaccctggaaaaatatcaatcaattaaattcaagattaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gatgctgaatagcaacaaaggaccctggaaaaatatcaatcaattaaattcaagattaat 717
Query: 407 aatgtatttcaccttggatttcagatcaaagacgttaccagttgctgttaacgcgctcta 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aatgtatttcaccttggatttcagatcaaagacgttaccagttgctgttaacgcgctcta 657
Query: 467 ttcttgaatattttgtatctaatcatcgtgtttttttaagatgaatcattttcgttttta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttcttgaatattttgtatctaatcatcgtgtttttttaagatgaatcattttcgttttta 597
Query: 527 agtaagtgtgaaagatatatgtccgtcagcaaaaaggcctaattgagtaattacaaggac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 agtaagtgtgaaagatatatgtccgtcagcaaaaaggcctaattgagtaattacaaggac 537
Query: 587 accaagtgagatataacaaagagatttgggtagatgagggatgagggatttgacggtgta 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 accaagtgagatataacaaagagatttgggtagatgagggatgagggatttgacggtgta 477
Query: 647 aagttgaatgtatggatgtattttgggcttgatatttcaatactttaccttttgcgtgaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aagttgaatgtatggatgtattttgggcttgatatttcaatactttaccttttgcgtgaa 417
Query: 707 attctactgtggagtgaggtgacattgcacttttgccgaagcgtaatacacaatcacctg 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 attctactgtggagtgaggtgacattgcacttttgccgaagcgtaatacacaatcacctg 357
Query: 767 gctttcatagactgacgtgtgtaccattattaattgactactttaacaat-aaggatgtg 825
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 356 gctttcatagactgacgtgtgtaccattattaattgactacttaaacaataaaggatgtg 297
Query: 826 atgcaaagaggtcgagctggataattttt-atccaagcatatatatgaaaacctccg-aa 883
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct: 296 atgcaaagaggtcgagctggataatttttaatccaagcatatatatgaaaa-ctccgaaa 238
Query: 884 gaaacctgcccaatanaatgtcgacgcgttccatagtataatag 927
||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct: 237 gaaacctgcccaataaaatgtcgacgcgtacaatagtataatag 194
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6575
Number of Sequences: 1807
Number of extensions: 6575
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)