BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG07FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1534 0.0
3x_Contig1806 103 6e-22
>3x_Contig1617
Length = 15119
Score = 1534 bits (774), Expect = 0.0
Identities = 822/833 (98%), Gaps = 4/833 (0%)
Strand = Plus / Plus
Query: 86 gaatctgaaaacaatagagactataattcttatcgttttcaccaattatctcggcagaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4651 gaatctgaaaacaatagagactataattcttatcgttttcaccaattatctcggcagaaa 4710
Query: 146 gttttctttgagattagaaatttaattggacgattatacgttaatatctttgaacactgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4711 gttttctttgagattagaaatttaattggacgattatacgttaatatctttgaacactgg 4770
Query: 206 ttggtgtcttactttcgtttgaattacgttgttacactttgataaacacacggggagtga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4771 ttggtgtcttactttcgtttgaattacgttgttacactttgataaacacacggggagtga 4830
Query: 266 ctgagaataaagttagtattatttcataaatcaagatgagcagtgttgcagcatcgcaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4831 ctgagaataaagttagtattatttcataaatcaagatgagcagtgttgcagcatcgcaaa 4890
Query: 326 ataaaatcaacgatttactggaagcaatcaggcaagagtttgccaatgtttcgcaagaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4891 ataaaatcaacgatttactggaagcaatcaggcaagagtttgccaatgtttcgcaagaag 4950
Query: 386 caaactcttaccgtttgcaaaaccaaaaggattatgattttaagattaatcaacaattag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951 caaactcttaccgtttgcaaaaccaaaaggattatgattttaagattaatcaacaattag 5010
Query: 446 cagaaatgcaacaggttagaaataccgtttatgagttggaattgactcacagaaaaatga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5011 cagaaatgcaacaggttagaaataccgtttatgagttggaattgactcacagaaaaatga 5070
Query: 506 aagatgcgtatgaggaggagattagcagattgaagttggaattagaacaaaaagatcgcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5071 aagatgcgtatgaggaggagattagcagattgaagttggaattagaacaaaaagatcgcc 5130
Query: 566 aattggcctctattgcccatggaagtaccgttggtaatgttccaggtcaagttcctcagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5131 aattggcctctattgcccatggaagtaccgttggtaatgttccaggtcaagttcctcagc 5190
Query: 626 ttagtagaaattctggtgctcagggaaatgctaacattgcgccaccaaatattccgcaac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5191 ttagtagaaattctggtgctcagggaaatgctaacattgcgccaccaaatattccgcaac 5250
Query: 686 caatggtttcgcaaactgtaggtactggtatggccccacaaatggctcctttgaacactc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5251 caatggtttcgcaaactgtaggtactggtatggccccacaaatggctcctttgaacactc 5310
Query: 746 aacatcctactcagcanactaagtctaatgcttggagagcaagcggccgcttaatttggc 805
|||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 5311 aacatcctactcagcaaactaagtctaatgc-tggagagcaagcggccgc-taatttggc 5368
Query: 806 tcctgtcattcagcagcagcaacaacctcagtcacaattacccaccac-acagcagcagc 864
||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct: 5369 tcctgtcattcagcagcagcaacaacctcagcaacaatta-ccaccacaacagcagcagc 5427
Query: 865 tacagcagcagcagcaacagtcttacatctcagttaccacggcagcttcagtt 917
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 5428 aacagcagcagcagcaacagtctaacatcccagttaccacggcagctccagtt 5480
>3x_Contig1806
Length = 53694
Score = 103 bits (52), Expect = 6e-22
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 552 acaaaaagatcgccaattggcctctattgcccatggaagtaccgttggtaatgttccagg 611
|||||| ||||| |||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct: 40969 acaaaatgatcgtcaattggcctcttctgccctaggaagtaccgttggtattgttccagg 41028
Query: 612 tcaagttcctcagcttagtagaaattct 639
|||| || ||||||||||||||||||||
Sbjct: 41029 tcaatttactcagcttagtagaaattct 41056
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7155
Number of Sequences: 1807
Number of extensions: 7155
Number of successful extensions: 221
Number of sequences better than 1.0e-20: 2
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)