BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG07RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1436 1043 0.0
3x_Contig471 343 4e-94
>3x_Contig1436
Length = 9951
Score = 1043 bits (526), Expect = 0.0
Identities = 549/554 (99%), Gaps = 2/554 (0%)
Strand = Plus / Minus
Query: 44 gctttggttgatgcagggaaaccataggaattattgtcttcgaagcacgctgagtgtatg 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 563 gctttggttgatgcagggaaaccagaggaattattgtcttcgaagcacgctgagtgtatg 504
Query: 104 ttagatacgccgataactgcttatagatggtgttcgttgttgttgcccgatggtgacgat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttagatacgccgataactgcttatagatggtgttcgttgttgttgcccgatggtgacgat 444
Query: 164 gacttcttttcatcagatctctctgatgaaaaattggaaatcacatttggttacttcata 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 443 gacttcttttcatcagatctctctgatgaaaaattggaaatcacatttggttacatcaaa 384
Query: 224 gacccattccttattgcattgtccgagaaggatgaatgctatccaaataatgggaaaccg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gacccattccttattgcattgtccgagaaggatgaatgctatccaaataatgggaaaccg 324
Query: 284 cttgaactattgcaaagatggcaatgtttcgtggataagaagttatggtcgaagaattcc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cttgaactattgcaaagatggcaatgtttcgtggataagaagttatggtcgaagaattcc 264
Query: 344 ggtcttatcaagggtgcaactcatgccgttccggaagaagattcacaaaaggagttattc 403
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 263 ggtcttatcaagggtgcaactcatg-cgttccggaagaagattcacaaaaggagttattc 205
Query: 404 aaaatggtcaccggtttcattaaggaaaatggattttgaa-cttttgatttgccacttgc 462
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 204 aaaatggtcaccggtttcattaaggaaaatggattttgaagcttttgatttgccacttgc 145
Query: 463 cgcattgagtcaaatgagatctagtttaattcgatctagtgtacgtgtatatagccttaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 cgcattgagtcaaatgagatctagtttaattcgatctagtgtacgtgtatatagccttaa 85
Query: 523 cgtatcgaatgagtcatatggcctatctctatctctatctatctttctatccgcatatct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 cgtatcgaatgagtcatatggcctatctctatctctatctatctttctatccgcatatct 25
Query: 583 atctttttttctag 596
||||||||||||||
Sbjct: 24 atctttttttctag 11
>3x_Contig471
Length = 2964
Score = 343 bits (173), Expect = 4e-94
Identities = 193/198 (97%), Gaps = 2/198 (1%)
Strand = Plus / Plus
Query: 707 cacattcctattactgtgaacatcatccgaaacaccatccaaattctgaattcattatgt 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacattcctattactgtgaacatcatccgaaacaccatccaaattctgaattcattatgt 60
Query: 767 ctactttcaacctaagaaacggttcgatttttaccanaccaactgttgactcantagaac 826
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 61 ctactttcaacctaagaaacggttcgatttttaccaaaccaactgttgactcaatagaac 120
Query: 827 cattgcaatttcatttgaaaggttctgattcagc-agtgactgcgttcccaatcttttca 885
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 cattgcaatttcatttgaaaggttctga-tcagcaagtgactgcgttcccaatcttttca 179
Query: 886 gcgnacgagattcccggg 903
||| ||||||||||||||
Sbjct: 180 gcggacgagattcccggg 197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6546
Number of Sequences: 1807
Number of extensions: 6546
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)