BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG10FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1540 0.0
>3x_Contig1728
Length = 20685
Score = 1540 bits (777), Expect = 0.0
Identities = 816/831 (98%)
Strand = Plus / Plus
Query: 87 gaatcaaatagcttggcaattgcaggttttaaattgtagatgttgagattcatactttca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12071 gaatcaaatagcttggcaattgcaggttttaaattgtagatgttgagattcatactttca 12130
Query: 147 tgagtgaaaacatcagatagcaacctagcaaagtccgaatattgctggtttggtagtgaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12131 tgagtgaaaacatcagatagcaacctagcaaagtccgaatattgctggtttggtagtgaa 12190
Query: 207 cttccatacacttccataaaccctaagatttgctggctgagaactggtttcaatgttctc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12191 cttccatacacttccataaaccctaagatttgctggctgagaactggtttcaatgttctc 12250
Query: 267 ctcgaaaaagattgatctaaaatggcagttgcgtaatgaagcatgatcttgaaaatagcc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12251 ctcgaaaaagattgatctaaaatggcagttgcgtaatgaagcatgatcttgaaaatagcc 12310
Query: 327 tgatcattgagggcagataagaatgtcgtataatggaagatgcctcttatgagagccaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12311 tgatcattgagggcagataagaatgtcgtataatggaagatgcctcttatgagagccaaa 12370
Query: 387 tgcaatggttgttgattgagtaccaacctctcttctattaaagaatcccatattctgcac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12371 tgcaatggttgttgattgagtaccaacctctcttctattaaagaatcccatattctgcac 12430
Query: 447 tgtaaacccattgcactattcaaaacatgtttctccatatcagtaagctcatgcagtgtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12431 tgtaaacccattgcactattcaaaacatgtttctccatatcagtaagctcatgcagtgtt 12490
Query: 507 gggagaatgtagacatctaatattgattgacaaagatagctgatttcaagatttcccaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12491 gggagaatgtagacatctaatattgattgacaaagatagctgatttcaagatttcccaaa 12550
Query: 567 taatttccattatccctttcggcattttcttgcaagagatccaataatgtattcagctgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12551 taatttccattatccctttcggcattttcttgcaagagatccaataatgtattcagctgt 12610
Query: 627 tcttcagtcaggggagatgatttgatgcaaattcttagcaacttgaagaaatttgcataa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12611 tcttcagtcaggggagatgatttgatgcaaattcttagcaacttgaagaaatttgcataa 12670
Query: 687 atttcatcttttagcttgaaaggaagattgttttctgatcttatgtactccccaattatg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12671 atttcatcttttagcttgaaaggaagattgttttctgatcttatgtactccccaattatg 12730
Query: 747 cggtataaattaagcannatttcaaaggatatggtgatctgagaaggactttgcataacc 806
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 12731 cggtataaattaagcaaattttcaaaggatatggtgatctgagaaggactttgcataacc 12790
Query: 807 ttttatcaacatgatacannaaagtcgaatttatcatgtaaaaactccnagaacaagctc 866
|| | | |||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct: 12791 ttatcaaacaatgatacaaaaaagtcgaatttatcaggtaaaaactcggagaacaagctc 12850
Query: 867 ttaaaaattggcanaggattaatggcaccgtagacagctggcgtaaactgt 917
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 12851 ttaaaaattggcagaggattaatggcaccgtagacagctggcgtaaactgt 12901
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6324
Number of Sequences: 1807
Number of extensions: 6324
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)