BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG10RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1626 0.0
>3x_Contig1749
Length = 22923
Score = 1626 bits (820), Expect = 0.0
Identities = 858/870 (98%), Gaps = 1/870 (0%)
Strand = Plus / Minus
Query: 47 ctttaaatgaaactgctgtttacggatgtattacgaatatcgattacttgagatctattg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9453 ctttaaatgaaactgctgtttacggatgtattacgaatatcgattacttgagatctattg 9394
Query: 107 catcgtcaaaaatgttcaaagaagcaaaggttgctacgaaggttttggattcttttgatt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9393 catcgtcaaaaatgttcaaagaagcaaaggttgctacgaaggttttggattcttttgatt 9334
Query: 167 ataagccatgcgcatttgaagtgttggcacctggtgcgaacacttctgttcaggattatc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9333 ataagccatgcgcatttgaagtgttggcacctggtgcgaacacttctgttcaggattatc 9274
Query: 227 cagggagaacaggatactggagaatcggtgttcctccatcaggtccaatggattcttatt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9273 cagggagaacaggatactggagaatcggtgttcctccatcaggtccaatggattcttatt 9214
Query: 287 cttttagattggctaatagggttgttggcaataactcaaaatcccctgctcttgaaatca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9213 cttttagattggctaatagggttgttggcaataactcaaaatcccctgctcttgaaatca 9154
Query: 347 ctttgaatggtccaaagctattattccacacggaaactgtgattgccgtatctggtggta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9153 ctttgaatggtccaaagctattattccacacggaaactgtgattgccgtatctggtggta 9094
Query: 407 ctgtctcttgtacattaaacgacgctcaaattgcacagaatgaaccaatagaagttaaac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9093 ctgtctcttgtacattaaacgacgctcaaattgcacagaatgaaccaatagaagttaaac 9034
Query: 467 gcggtgatattttgtcagttggaaaagtcactgtgggatgcagagcgtatttgtcaataa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9033 gcggtgatattttgtcagttggaaaagtcactgtgggatgcagagcgtatttgtcaataa 8974
Query: 527 gaggagggattgatgttcctgaatatcttggctcaagatcaacgtttgcaatgggaaaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8973 gaggagggattgatgttcctgaatatcttggctcaagatcaacgtttgcaatgggaaaca 8914
Query: 587 tgggaggttacaatggaagaattttgaaactaggtgacgttctattcttaaaccaaccag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8913 tgggaggttacaatggaagaattttgaaactaggtgacgttctattcttaaaccaaccag 8854
Query: 647 agttatctgtttcctcattaccagctcccgatttcgaaccgcaagcagctccgaagtcat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8853 agttatctgtttcctcattaccagctcccgatttcgaaccgcaagcagctccgaagtcat 8794
Query: 707 tattgccaacgctttcgacgaataaagactggaaaattggtgtcacatgtggtcctcatg 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8793 tattgccaacgctttcgacgaataaagactggaaaattggtgtcacatgtggtcctcatg 8734
Query: 767 gatccattgaccttttcaaagaagaatacattgagcaattctttaacgacaaatggaaag 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8733 gatccattgaccttttcaaagaagaatacattgagcaattctttaacgacaaatggaaag 8674
Query: 827 ttcattataactccaacnagattggtgtcagattaattgggcctaaacctaatgggggca 886
||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 8673 ttcattataactccaacagatttggtgtcagattaattgggcctaaacctaaatgggcaa 8614
Query: 887 gatcgnatgtgggtgaagca-gtttacatc 915
||||| ||| ||||||||| |||||||||
Sbjct: 8613 gatcggatggtggtgaagcaggtttacatc 8584
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6568
Number of Sequences: 1807
Number of extensions: 6568
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)