BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG11FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1586 0.0
>3x_Contig1785
Length = 37935
Score = 1586 bits (800), Expect = 0.0
Identities = 818/823 (99%), Gaps = 1/823 (0%)
Strand = Plus / Minus
Query: 89 caacggctaggacatcacagcagcaaaataccacgtgttgcattagattgtaacgtgaac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22062 caacggctaggacatcacagcagcaaaataccacgtgttgcattagattgtaacgtgaac 22003
Query: 149 aataatttactggatgatgacccttttttcttttatattaatgacgctgacgaattgaac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22002 aataatttactggatgatgacccttttttcttttatattaatgacgctgacgaattgaac 21943
Query: 209 tatttgaaattgctaggagtgaacgtatcccccgagaaaattgaagaaatcttgatagaa 268
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21942 tatttgaaaatgctaggagtgaacgtatcccccgagaaaattgaagaaatcttgatagaa 21883
Query: 269 tttcgggcacaagtgctagcattagatactatcaataccttagaaaggcagcaaaattat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21882 tttcgggcacaagtgctagcattagatactatcaataccttagaaaggcagcaaaattat 21823
Query: 329 ctttctgctgaagaatcactttctgctctcctttataaagaagcacaacgaccaccactg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21822 ctttctgctgaagaatcactttctgctctcctttataaagaagcacaacgaccaccactg 21763
Query: 389 aagactaatagttacaaacatttgttcaagaaaatccttatattctggcgtaaacaccaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21762 aagactaatagttacaaacatttgttcaagaaaatccttatattctggcgtaaacaccaa 21703
Query: 449 tatgcgatgaatacagacatatctctagtagattcatcggtaacttcttgttcatcttcc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21702 tatgcgatgaatacagacatatctctagtagattcatcggtaacttcttgttcatcttcc 21643
Query: 509 atttttccacaaagagtacaaacgatacagcatgaaggatcgtttttcagtctcacgaat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21642 atttttccacaaagagtacaaacgatacagcatgaaggatcgtttttcagtctcacgaat 21583
Query: 569 agtctcatatcaccaaataaaaggaaaaagacgtggtttatacaaggacatttgaaaaag 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21582 agtctcatatcaccaaataaaaggaaaaagacgtggtttatacaaggacatttgaaaaag 21523
Query: 629 cttttcaagctacaatgaacaaccaaaaaaaaactgtaactcaagtttaagcgtttgata 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21522 cttttcaagctacaatgaacaaccaaaaaaaaactgtaactcaagtttaagcgtttgata 21463
Query: 689 tagtaatgtttttacttaaatatctctatcttataggttatcaagttcgaatgaatcgtc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21462 tagtaatgtttttacttaaatatctctatcttataggttatcaagttcgaatgaatcgtc 21403
Query: 749 atcagtgttaggcacctttgtataaccagatttgttttttgctggtttgtccgcagtaga 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21402 atcagtgttaggcacctttgtataaccagatttgttttttgctggtttgtccgcagtaga 21343
Query: 809 gggtgcctcgtcaatggataactt-aaatcatcgncctggttttctatgtcatctgccca 867
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 21342 gggtgcctcgtcaatggataacttaaaatcatcgccctggttttctatgtcatctgccca 21283
Query: 868 tgcaacggatttgtttgatgaaagtggcctatttttcggatct 910
|||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 21282 tgcaacggatttgtttgatgaaggtggcctattttccggatct 21240
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8168
Number of Sequences: 1807
Number of extensions: 8168
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)