BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZG11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig418 833 0.0
3x_Contig789 202 9e-52
>3x_Contig418
Length = 1289
Score = 833 bits (420), Expect = 0.0
Identities = 446/452 (98%), Gaps = 2/452 (0%)
Strand = Plus / Minus
Query: 51 gcttcatgcccgtgtctgtaattatgacatagaggcgtattcatccactttctcagcaga 110
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 454 gcttcatgcccgtgtctgtaatgatgacatagaggcgtattcatccactttctcagcaga 395
Query: 111 aatgaaagacatggcatatttcattgatgatataacagataagactcttatgatcctaga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aatgaaagacatggcatatttcattgatgatataacagataagactcttatgatcctaga 335
Query: 171 tgaattaggacgtggctcaagcatcgcagatgggttctctatagctttggttattttgga 230
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct: 334 tgaattaggacgtggctcaagcatcgcagatgggttctctatagctttggctatatcgga 275
Query: 231 atatctcctttccaaaaatgctactgtatttctatcgacacatttcagagatattcctaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atatctcctttccaaaaatgctactgtatttctatcgacacatttcagagatattcctaa 215
Query: 291 aatattggcaccaaagcctcgtgttttacatcttgagatgaaaactgagattgatcagga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aatattggcaccaaagcctcgtgttttacatcttgagatgaaaactgagattgatcagga 155
Query: 351 atcacatctcaaaatgaaatataaagcctccacagaatcagaagagatagaaggatacgg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atcacatctcaaaatgaaatataaagcctccacagaatcagaagagatagaaggatacgg 95
Query: 411 tatgatgatttgtaaacgaattttcagtgaaagaattatgttggaagcatacaaaatatc 470
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 94 tatgatgatttgtaaacgaattttcagtgaaagaattatg-tggaagcatacaaaatatc 36
Query: 471 ggaattacttcgagctagcaaaagaaaaggtt 502
||||||| ||||||||||||||||||||||||
Sbjct: 35 ggaatta-ttcgagctagcaaaagaaaaggtt 5
>3x_Contig789
Length = 3508
Score = 202 bits (102), Expect = 9e-52
Identities = 178/201 (88%), Gaps = 2/201 (0%)
Strand = Plus / Plus
Query: 726 tttaattctatttacttaatattaaatgacctatgtaatttctcatgtttgctgcatctt 785
||||||| |||||| |||||||||||| |||||| ||||||||||| ||| || ||||||
Sbjct: 52 tttaattttatttatttaatattaaattacctatttaatttctcattttttcttcatctt 111
Query: 786 tagaatcaaagctcanagtgtaatccttgctcatataaagtgtattcagaccaacatata 845
|| |||||||||||| | | |||||||| |||||||||| | ||| || || ||||||||
Sbjct: 112 tataatcaaagctcaaattttaatcctttctcatataaattttatacatacaaacatata 171
Query: 846 tgccgcagtcaaatccgtttggctgctgtgggacagc-atatggcaaagttcgaaatcct 904
||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 172 tgccgcattcaaatccgtttggctgctgtggacaagcaatatggcaaagttcgaaatcct 231
Query: 905 ca-caagcttttgtttgcttt 924
|| ||||||||||||||||||
Sbjct: 232 caccaagcttttgtttgcttt 252
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7946
Number of Sequences: 1807
Number of extensions: 7946
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 2
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)