BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZH01FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1627 400 e-111
3x_Contig757 224 2e-58
>3x_Contig1627
Length = 15708
Score = 400 bits (202), Expect = e-111
Identities = 216/218 (99%), Gaps = 2/218 (0%)
Strand = Plus / Minus
Query: 88 agattgaatcaccacatcacagtagaaaaacacgcttcatcagctgcaatcattgggata 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agattgaatcaccacatcacagtagaaaaacacgcttcatcagctgcaatcattgggata 157
Query: 148 actcatcggttattggcagaggtaacacaattaatactctgatttggttgaaaaagccag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 actcatcggttattggcagaggtaacacaattaatactctgatttggttgaaaaagccag 97
Query: 208 cggtaggaacaaaggtctgattttaatcctcatataacagtcaaagcagcgaatgttctc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 cggtaggaacaaaggtctgattttaatcctcatataacagtcaaagcagcgaatgttctc 37
Query: 268 tcggtttttcacaagatcggtttcaactggtgtagagt 305
|||| ||||||||||||||| |||||||||||||||||
Sbjct: 36 tcgg-ttttcacaagatcgg-ttcaactggtgtagagt 1
>3x_Contig757
Length = 2436
Score = 224 bits (113), Expect = 2e-58
Identities = 194/213 (91%), Gaps = 6/213 (2%)
Strand = Plus / Plus
Query: 711 acgtagatgtatggtataatactgtattgatgtgtcaattgcatagaaatgcgttccaaa 770
|||| ||| |||||| ||||||| |||||||||||||||| | |||||||||||||||||
Sbjct: 89 acgttgatttatggtttaatactttattgatgtgtcaatttcttagaaatgcgttccaaa 148
Query: 771 acgttcaagattccggcatggtagagagaggcctaaagaagttatcatcgactg-tacca 829
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 149 acgttcaagattccggcatggtagagagaggcctaaggaagttatcatcgactgttacca 208
Query: 830 aaagagaggattc-actggtttaac-aaggaaattg-tcaagcttttggtagac-acaga 885
||||||| ||| | ||||||||||| |||||||||| ||||||||| ||||||| |||||
Sbjct: 209 aaagagaagatacaactggtttaacaaaggaaattgttcaagctttgggtagacaacaga 268
Query: 886 aacttgaagtgaaattacctaa-ttcgctagaa 917
| |||| |||||||||||||| ||||||||||
Sbjct: 269 acgttgaggtgaaattacctaatttcgctagaa 301
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6088
Number of Sequences: 1807
Number of extensions: 6088
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 2
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)