BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZH01RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1602 0.0
>3x_Contig1640
Length = 15521
Score = 1602 bits (808), Expect = 0.0
Identities = 860/871 (98%), Gaps = 5/871 (0%)
Strand = Plus / Plus
Query: 44 gcttttgtcaattcgacgttctatgaactaggtccaacgtttcctatctagttgaaggta 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11341 gcttttgtcaattcgacgttctatgaactaggtccaacgtttcctatctagttgaaggta 11400
Query: 104 gccctacgtttgaagtcgttattgttttcttgctaaatactatgatcctccctattattg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11401 gccctacgtttgaagtcgttattgttttcttgctaaatactatgatcctccctattattg 11460
Query: 164 ttatttttattgtaacaatcgcactttctttattttcaacactaattcaaggt-atatta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 11461 ttatttttattgtaacaatcgcactttctttattttcaacactaattcaaggttaaaaga 11520
Query: 223 caaacgttctagacgcatataactgcattcagttcaggcattgatctcgagcgttaacaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11521 caaacgttctagacgcatataactgcattcagttcaggcattgatctcgagcgttaacaa 11580
Query: 283 actagttggacaatttcagatgctcataaattgctgaagatccaggaatgttcagcacct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11581 actagttggacaatttcagatgctcataaattgctgaagatccaggaatgttcagcacct 11640
Query: 343 cgaaaggtagtatgtcagttcaaccaatatcgtaaaatagtgactgaagttttcttcacg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11641 cgaaaggtagtatgtcagttcaaccaatatcgtaaaatagtgactgaagttttcttcacg 11700
Query: 403 tgacccagatctgtgaacggaggtttcaatattaattataacaaagacgatcctgggttg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11701 tgacccagatctgtgaacggaggtttcaatattaattataacaaagacgatcctgggttg 11760
Query: 463 gcagagaaaaactcggatcccttcactgcaaagtttatacacaaaaccatattccctcat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11761 gcagagaaaaactcggatcccttcactgcaaagtttatacacaaaaccatattccctcat 11820
Query: 523 ttgtcccaaacttcgtttcacgatggacaggccatggatactattcatagctgaacctga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11821 ttgtcccaaacttcgtttcacgatggacaggccatggatactattcatagctgaacctga 11880
Query: 583 atacagtttacaggaatataagcttttgcaaaaagagttcaacacggttaattacacact 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11881 atacagtttacaggaatataagcttttgcaaaaagagttcaacacggttaattacacact 11940
Query: 643 tgaacgagatgttgatggcactggtaaggaagcatttctaactttcttggaccagcattc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11941 tgaacgagatgttgatggcactggtaaggaagcatttctaactttcttggaccagcattc 12000
Query: 703 gaagcaaaagggtccaattgtcggaatatttggagggtatccacaattcgctccctttag 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 12001 gaagcaaaagggtccaattgtcggaatatttggagggtatccacaattcgctcccttagg 12060
Query: 763 tggtttgagtgcagaaatcttggatgatcatcgttggcctgngtcgatcaagtgcatatg 822
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12061 tggtttgagtgcagaaatcttggatgatcatcgttggcctgggtcgatcaagtgcatatg 12120
Query: 823 tctgtgttctgtagg-tacaattggctcgacctgaa-tcactacgggaaaa-ggcattca 879
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 12121 tctgtgttctgtaggttacaattggctcgacctgaagtcactacgggaaaagggcattca 12180
Query: 880 actgtacaa-tatgacgacatgatacaggac 909
||||||||| |||||||||||||||||||||
Sbjct: 12181 actgtacaattatgacgacatgatacaggac 12211
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5991
Number of Sequences: 1807
Number of extensions: 5991
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)