BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC11ZH03RM1.SCF screened BAC_end (941 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1248 1669 0.0 >3x_Contig1248 Length = 5957 Score = 1669 bits (842), Expect = 0.0 Identities = 881/890 (98%), Gaps = 3/890 (0%) Strand = Plus / Plus Query: 43 ctttaaaat-atatctaagtgccattctagttaaaagatgtgtacataaaaagaagataa 101 ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 4196 ctttaaaatcatatctaagtgccagcctagttaaaagatgtgtacataaaaagaagataa 4255 Query: 102 aagattggtttagcgagtgacagccgttcatactgtactactccgtgtttgtaacctttg 161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4256 aagattggtttagcgagtgacagccgttcatactgtactactccgtgtttgtaacctttg 4315 Query: 162 aaatacttatttataaatgaactgcgtaatggatacaatctaacctaatacgattctcta 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 4316 aaatacttatttataaatgaactgcgtaatggatacaatctaacctaatacgattcgcta 4375 Query: 222 taaagtattgtatgggtgtatgggtgtatgggtgctttcgttgtttcaacatcagttttt 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4376 taaagtattgtatgggtgtatgggtgtatgggtgctttcgttgtttcaacatcagttttt 4435 Query: 282 cgaattattcaatcaacctaaacaaagcattcactagcttttggtacattaacttacatg 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4436 cgaattattcaatcaacctaaacaaagcattcactagcttttggtacattaacttacatg 4495 Query: 342 catcaacttgtatagatgagacatatcatctgcttacctcctagtagaataaactaagct 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4496 catcaacttgtatagatgagacatatcatctgcttacctcctagtagaataaactaagct 4555 Query: 402 accgctagattgagattaaagaaaaatcaaaatcaaatgtctgcggcacagagtggagca 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4556 accgctagattgagattaaagaaaaatcaaaatcaaatgtctgcggcacagagtggagca 4615 Query: 462 acggttgaacatcaacaggcacaaactgtgccagttgcacaaccaactgacatgtatatc 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4616 acggttgaacatcaacaggcacaaactgtgccagttgcacaaccaactgacatgtatatc 4675 Query: 522 caaccgtatttgaagaaattaataccagaattggatgggctaagtaagttacaagaggct 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4676 caaccgtatttgaagaaattaataccagaattggatgggctaagtaagttacaagaggct 4735 Query: 582 gagaagagaattgacatatatttaagtcgtaaaaaaattgatttgcatcagaatattact 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4736 gagaagagaattgacatatatttaagtcgtaaaaaaattgatttgcatcagaatattact 4795 Query: 642 caatggactcattccaaatacacagatcctgcgaataatcagtttgttcgtgttttcatt 701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4796 caatggactcattccaaatacacagatcctgcgaataatcagtttgttcgtgttttcatt 4855 Query: 702 tctaatatttctgagaaccagccatggcagacgaacgatgagaccatggaacttgatcaa 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4856 tctaatatttctgagaaccagccatggcagacgaacgatgagaccatggaacttgatcaa 4915 Query: 762 gcatcatggacattgcgtattgaaggtagactgttagataatgggaaagcagacgatcca 821 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 4916 gcatcatggacattgcgtattgaaggtagactgttagataatgggaaggcagacgatcca 4975 Query: 822 aataggcctaaattttcctcctttatagaaagcgtcgcgatagatttc-aacctgtagag 880 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 4976 aataggcctaaattttcctcctttatagaaagcgtcgcgatagatttcaaacctgtagag 5035 Query: 881 gaagatcaagatgatggaactgatctag-aatgggagaccccttattaga 929 |||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 5036 gaagatcaagatgatgaaactgatcaagaaatgggagaccccttattaga 5085 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7357 Number of Sequences: 1807 Number of extensions: 7357 Number of successful extensions: 66 Number of sequences better than 1.0e-20: 1 length of query: 941 length of database: 10,358,551 effective HSP length: 16 effective length of query: 925 effective length of database: 10,329,639 effective search space: 9554916075 effective search space used: 9554916075 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)