BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZH04RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 1681 0.0
>3x_Contig1611
Length = 15286
Score = 1681 bits (848), Expect = 0.0
Identities = 860/863 (99%), Gaps = 1/863 (0%)
Strand = Plus / Plus
Query: 47 acaaatagtcaccgatatcgtattgataaaaatgagagtgctacaggacttactttggct 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3523 acaaatagtcaccgatatcgtattgataaaaatgagagtgctacaggacttactttggct 3582
Query: 107 cgttacaaccttctaaatctctttcttccagaagtccttattgaagctgaattctcaccg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3583 cgttacaaccttctaaatctctttcttccagaagtccttattgaagctgaattctcaccg 3642
Query: 167 caaaaatctggagaaaaattacagcttcctgttaaaagatctcttgggggttacagcagg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3643 caaaaatctggagaaaaattacagcttcctgttaaaagatctcttgggggttacagcagg 3702
Query: 227 ggtcgtaggctcattgtagagctttccgaaccgaaatggacgactcatgcggccagaata 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3703 ggtcgtaggctcattgtagagctttccgaaccgaaatggacgactcatgcggccagaata 3762
Query: 287 ccaactcttaatgacagctttaatgaaaaccagaaaatggcgattgaacgttcgctcacc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3763 ccaactcttaatgacagctttaatgaaaaccagaaaatggcgattgaacgttcgctcacc 3822
Query: 347 tgccgtgactacaacttgattttaggaatgcctggaactggtaagacatcagttatttgt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3823 tgccgtgactacaacttgattttaggaatgcctggaactggtaagacatcagttatttgt 3882
Query: 407 gaattagtttcaatattggtaaatcagggaaaatctgtcatggtgacaagctacaccaat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3883 gaattagtttcaatattggtaaatcagggaaaatctgtcatggtgacaagctacaccaat 3942
Query: 467 tcagctgtcgataatattataatgaagctaacttcgcgtatccctcgctctaagatggta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3943 tcagctgtcgataatattataatgaagctaacttcgcgtatccctcgctctaagatggta 4002
Query: 527 cgtttgggatctggacgtcgagtccatgatttggtcaaaccatattgcataacagagatg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4003 cgtttgggatctggacgtcgagtccatgatttggtcaaaccatattgcataacagagatg 4062
Query: 587 ttagatggtgataacgagaacttgtcggaaataatcgatgcagcacaagtggtcggtgta 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4063 ttagatggtgataacgagaacttgtcggaaataatcgatgcagcacaagtggtcggtgta 4122
Query: 647 acgtgtctcggtattaatgatccgtggttacaaatgcgaaatggtgattttgattatgtt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4123 acgtgtctcggtattaatgatccgtggttacaaatgcgaaatggtgattttgattatgtt 4182
Query: 707 atattagatgaagccagtcaagtttcgctacctgtcgccattggtccattaaggttcgga 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4183 atattagatgaagccagtcaagtttcgctacctgtcgccattggtccattaaggttcgga 4242
Query: 767 tataagttcatattagtcggagaccattatcaattaccgccattagtgaagaactcattt 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4243 tataagttcatattagtcggagaccattatcaattaccgccattagtgaagaactcattt 4302
Query: 827 gcacgtgacaatggtctacaagaatcgttattcg-aaaattgtgtcattcgcatcctcaa 885
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4303 gcacgtgacaatggtctacaagaatcgttattcgaaaaattgtgtcattcgcatcctcaa 4362
Query: 886 agcgttgntgaactacaaataca 908
||||||| |||||||||| ||||
Sbjct: 4363 agcgttgttgaactacaattaca 4385
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5652
Number of Sequences: 1807
Number of extensions: 5652
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)