BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZH05FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1473 1586 0.0
>3x_Contig1473
Length = 8041
Score = 1586 bits (800), Expect = 0.0
Identities = 822/827 (99%), Gaps = 2/827 (0%)
Strand = Plus / Plus
Query: 87 ctacatcataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4458 ctacatcataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaa 4517
Query: 147 caaataagatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4518 caaataagatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttga 4577
Query: 207 catcgaagaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 catcgaagaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaatt 4637
Query: 267 gatacaacgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 gatacaacgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacac 4697
Query: 327 caacaccaccaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 caacaccaccaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattg 4757
Query: 387 tatgaacatcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgaga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 tatgaacatcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgaga 4817
Query: 447 tcactaaggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 tcactaaggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccac 4877
Query: 507 cgaccgcacccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 cgaccgcacccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttca 4937
Query: 567 acgatgccttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 acgatgccttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaa 4997
Query: 627 tacctgcaaatgatgcgaaaaaaccaagcataataaccatatacgttttatttgagaagt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 tacctgcaaatgatgcgaaaaaaccaagcataataaccatatacgttttatttgagaagt 5057
Query: 687 tcacttcacaaaattccattcttctcatacgttgtcttagcgtcttagtaactggagtat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 tcacttcacaaaattccattcttctcatacgttgtcttagcgtcttagtaactggagtat 5117
Query: 747 ttgcaatttcatcttcgtacaccttaatctgtgttaagatntgatcttcactgaaaaaat 806
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5118 ttgcaatttcatcttcgtacaccttaatctgtgttaagatttgatcttcactgaaaaaat 5177
Query: 807 atttgtcgtcatcttcaccgactttcacaccggncttcaacttcgtgtaccgagtcaaca 866
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5178 aattgtcgtcatcttcaccgactttcacaccgg-cttcaacttcgtgtaccgagtcaaca 5236
Query: 867 gaactcgtactctttagcaagcccgaattctttttgctggtcaactg 913
|||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 5237 gaactcgtactcttaagcaag-ccgaattctttttgctggtcaactg 5282
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6404
Number of Sequences: 1807
Number of extensions: 6404
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)