BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZH05RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1415 0.0
>3x_Contig1749
Length = 22923
Score = 1415 bits (714), Expect = 0.0
Identities = 863/889 (97%), Gaps = 23/889 (2%)
Strand = Plus / Minus
Query: 46 cggtttacaaagcgatttattattccccttatgaaagtagctgcactgtttgaaatacag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13263 cggtttacaaagcgatttattattccccttatgaaagtagctgcactgtttgaaatacag 13204
Query: 106 cgaaccgaaacacgaatacagtgcagcaaattcccctatagcagtatggtgggctccatt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13203 cgaaccgaaacacgaatacagtgcagcaaattcccctatagcagtatggtgggctccatt 13144
Query: 166 gccttatgaaccaagctatccttactggcctgacggatataccccaagtgtatcctgtag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13143 gccttatgaaccaagctatccttactggcctgacggatataccccaagtgtatcctgtag 13084
Query: 226 tgccatgttctaaggtatgcagatttccgcatcttagcgcctaattattatttgtatttt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13083 tgccatgttctaaggtatgcagatttccgcatcttagcgcctaattattatttgtatttt 13024
Query: 286 gtttagaacgattgggcattttgtttgtggtttagataagggaaattatcttccatacaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13023 gtttagaacgattgggcattttgtttgtggtttagataagggaaattatcttccatacaa 12964
Query: 346 aaatgtcatttccgttagcgtatatgaaaaaaaacatggatcgcagataaaagttaagat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12963 aaatgtcatttccgttagcgtatatgaaaaaaaacatggatcgcagataaaagttaagat 12904
Query: 406 aagccattccattctcttctatgccatttacagtgttatcctcaaagttagaattcggat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12903 aagccattccattctcttctatgccatttacagtgttatcctcaaagttagaattcggat 12844
Query: 466 acaaacgacagttctcgtacttgttattggcaagcgaaacttcaatggctaggtgaagag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12843 acaaacgacagttctcgtacttgttattggcaagcgaaacttcaatggctaggtgaagag 12784
Query: 526 aaagtatataaactgctcagttatggaattaataaagtagcagaggttcatgagatgtta 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12783 aaagtatataaactgctcagttatggaattaataaagtagcagaggttcatgagatgtta 12724
Query: 586 gatctcgtttaattccgaagtgtcaa-ttttactacggttat-aatatagttcctaat-a 642
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
Sbjct: 12723 gatctcgtttaattccgaagtgtcaatttttactacggttataaatatagttcctaataa 12664
Query: 643 aaccaagtgtaa-ttcagt-aaagtaag-aatcttacgc-cacaagttgtaccttgtgct 698
|||||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct: 12663 aaccaagtgtaagttcagtgaaagtaagaaatcttacgcgcacaagttgtaccttgtgct 12604
Query: 699 -ctt-ctttactatataca-catttattaatat-ttcaaatacaagttgttaaagc-caa 753
||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| |||
Sbjct: 12603 gcttgctttactatatacagcatttattaatatgttcaaatacaagttgttaaagcgcaa 12544
Query: 754 aattgcaataagatggagtccactttaggttggtcagtccaagattggttgagtttccat 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12543 aattgcaataagatggagtccactttaggttggtcagtccaagattggttgagtttccat 12484
Query: 814 tccaaatcaac---cccactaagtcattagaaattgcttg-aaacttgttgaaagtcc-- 867
||||||||||| || ||||||||||||| ||||||||| |||||||||| ||||||
Sbjct: 12483 tccaaatcaacgcgccaactaagtcattag-aattgcttgaaaacttgttg-aagtccca 12426
Query: 868 aaagccagcaccagnagaccccntgcttgga-ttctttaatccctgtgg 915
|||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 12425 aaagccagcaccagaggaccc--tgcttggatttctttaatccctgtgg 12379
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6521
Number of Sequences: 1807
Number of extensions: 6521
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)