BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZH06FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1528 0.0
>3x_Contig1604
Length = 15703
Score = 1528 bits (771), Expect = 0.0
Identities = 843/863 (97%), Gaps = 3/863 (0%)
Strand = Plus / Plus
Query: 86 tagcacataaaatggtaactcgattggaaactttaatgaaggaaaacgaagaaatggcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14483 tagcacataaaatggtaactcgattggaaactttaatgaaggaaaacgaagaaatggcaa 14542
Query: 146 aaatgcttagttatggtcgagtgaaggagacaagtatcgagctcgaacttttacgtaaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14543 aaatgcttagttatggtcgagtgaaggagacaagtatcgagctcgaacttttacgtaaag 14602
Query: 206 aaaaccaagaactcaaagaaagactaaggattctacagcaagaaaagtaacaccaaagta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14603 aaaaccaagaactcaaagaaagactaaggattctacagcaagaaaagtaacaccaaagta 14662
Query: 266 taagatcttgatccttctttttctgatatttttgcttttttctgccaatgacattctagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14663 taagatcttgatccttctttttctgatatttttgcttttttctgccaatgacattctagt 14722
Query: 326 tggacgttttatttgacgatctaaaaactttcgagagtaattcaagatacatgtatgcta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14723 tggacgttttatttgacgatctaaaaactttcgagagtaattcaagatacatgtatgcta 14782
Query: 386 tataacatctacctagattaggtatactttgctgacacacaaaaatgtaaatgaaccatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14783 tataacatctacctagattaggtatactttgctgacacacaaaaatgtaaatgaaccatt 14842
Query: 446 gatatttatttcatccgacgttagaaacttacgattagagaaacttgaacatacaaagtg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14843 gatatttatttcatccgacgttagaaacttacgattagagaaacttgaacatacaaagtg 14902
Query: 506 tagacctttatgtgaagtaattttagttgattaaataaactgtatgcggacttgtccttg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14903 tagacctttatgtgaagtaattttagttgattaaataaactgtatgcggacttgtccttg 14962
Query: 566 taatatgtacatgaggaggctcggaaaataaatattggttggccgtttattcttccagtt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14963 taatatgtacatgaggaggctcggaaaataaatattggttggccgtttattcttccagtt 15022
Query: 626 acctgagtttggctatcttttcaagaagtgattgtgtgtttaagaagattatgaggtatt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15023 acctgagtttggctatcttttcaagaagtgattgtgtgtttaagaagattatgaggtatt 15082
Query: 686 acaaaaacgatgcgggaaaagtgattgttattcaagcctttgaaagagctcttctgtttt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15083 acaaaaacgatgcgggaaaagtgattgttattcaagcctttgaaagagctcttctgtttt 15142
Query: 746 t-acaccctttgccaataatcttagtacatcttcagttgtttcccaaccgatatcagcat 804
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 15143 taacaccctttgccaataatcttagaacatcttcagttgtttcccaaccgatacaggcat 15202
Query: 805 cggtgatagaacattcgtaaattaacttttcacgcccacctt-tggaggaacgtcttgtc 863
|||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct: 15203 cggtgatagaacatccgtaaatcaacttttcacggccaccttctggaggaacgtcttgtc 15262
Query: 864 taccttcgacttaatgagaatcgaacatga-accacagatagcattttggacagctgaaa 922
||||||||||| | | ||| |||| ||||| |||||||||||||||||| ||||||| |
Sbjct: 15263 taccttcgactaagttagattcgatcatgacaccacagatagcattttgaccagctgata 15322
Query: 923 gttgttcggtaagtgactgagcc 945
|||||||| |||||||||||||
Sbjct: 15323 gttgttcgtaaagtgactgagcc 15345
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7216
Number of Sequences: 1807
Number of extensions: 7216
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)