BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC11ZH06RM1.SCF screened BAC_end (948 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1238 1691 0.0 >3x_Contig1238 Length = 5289 Score = 1691 bits (853), Expect = 0.0 Identities = 899/910 (98%), Gaps = 4/910 (0%) Strand = Plus / Plus Query: 39 aaaaccttaagctcaattctaatgtcaatattgttgatggttcatcggaaactgatccgg 98 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2996 aaaagcttaagctcaattctaatgtcaatattgttgatggttcatcggaaactgatccgg 3055 Query: 99 acggcagaaaagaggaaactgaaggactttctcaaactgaagaccttgttgaacttccct 158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3056 acggcagaaaagaggaaactgaaggactttctcaaactgaagaccttgttgaacttccct 3115 Query: 159 gctggattttggatatgctccctgacgatatattatccatgattatagacatggttgtgt 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3116 gctggattttggatatgctccctgacgatatattatccatgattatagacatggttgtgt 3175 Query: 219 tattctcagcagactcgtggatgaacctatctttgacttgtaaaaagtttaatttgctat 278 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3176 taagctcagcagactcgtggatgaacctatctttgacttgtaaaaagtttaatttgctat 3235 Query: 279 gcttccacgattcctcaccgtaccggactttcgcggaatacatctataagaagcaagtat 338 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3236 gcttccacgattcctcac-gtaccggactttcgcggaatacatctataagaagcaagtat 3294 Query: 339 acaacgaaaatgagatgaggctaaacggtatatcagatatacaagcactagcagaaaccg 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3295 acaacgaaaatgagatgaggctaaacggtatatcagatatacaagcactagcagaaaccg 3354 Query: 399 tatggggtcaaaattatagaaagatgctaaaggaacggccgtatatcaagttccatggaa 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3355 tatggggtcaaaattatagaaagatgctaaaggaacggccgtatatcaagttccatggaa 3414 Query: 459 tatatatcagtgtggtgaattatttgaggcacggatcgatcccggaaggatcatcttcgc 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3415 tatatatcagtgtggtgaattatttgaggcacggatcgatcccggaaggatcatcttcgc 3474 Query: 519 tgttgaacccaatccacatgatcacttattacaggtacttcagattctatccagatggaa 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3475 tgttgaacccaatccacatgatcacttattacaggtacttcagattctatccagatggaa 3534 Query: 579 gatgcattagattattgactactgacgaaccaaatatagtggtacctggtttctctttag 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3535 gatgcattagattattgactactgacgaaccaaatatagtggtacctggtttctctttag 3594 Query: 639 aaagatgttctgaaagaaaagactcagatatatgttcgtggtccctgtcattagacgacg 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3595 aaagatgttctgaaagaaaagactcagatatatgttcgtggtccctgtcattagacgacg 3654 Query: 699 gccttgatcagttgacaatcaagaggaatagaagaaaagatgggcttgaatntaacgaga 758 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 3655 gccttgatcagttgacaatcaagaggaatagaagaaaagatgggcttgaatttaacgaga 3714 Query: 759 tcttgaaaatctcaaacagaggtcacaagaagttcagcaagttgaaatggattgcttctt 818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3715 tcttgaaaatctcaaacagaggtcacaagaagttcagcaagttgaaatggattgcttctt 3774 Query: 819 ctgcaacgaggncagacggcacaacaatgcagntctcatntgagc-aagaaaaaccattt 877 ||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||| Sbjct: 3775 ctgcaacgaggcaagacggcacaacaatgcagttctcat-tgagcaaagaaaaaccattt 3833 Query: 878 catttctcgaaggcgaagtcataccgtgactgctagatcagggctgtcatatttga-tac 936 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3834 catttctcgaaggcgaagtcataccgtgactgctagatcagggctgtcatatttgattac 3893 Query: 937 tataacagcc 946 |||||||||| Sbjct: 3894 tataacagcc 3903 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6746 Number of Sequences: 1807 Number of extensions: 6746 Number of successful extensions: 35 Number of sequences better than 1.0e-20: 1 length of query: 948 length of database: 10,358,551 effective HSP length: 16 effective length of query: 932 effective length of database: 10,329,639 effective search space: 9627223548 effective search space used: 9627223548 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)