BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZH09FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1340 1643 0.0
>3x_Contig1340
Length = 7156
Score = 1643 bits (829), Expect = 0.0
Identities = 865/872 (99%), Gaps = 4/872 (0%)
Strand = Plus / Plus
Query: 87 atttagcctccgatagtgaagaatctgaagttgagcatgatgatcaagttaaaaataaac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atttagcctccgatagtgaagaatctgaagttgagcatgatgatcaagttaaaaataaac 734
Query: 147 tcaaggctttagtaatggattccgtaaaagtggggcaaaagtcactatttgatcaaaagg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcaaggctttagtaatggattccgtaaaagtggggcaaaagtcactatttgatcaaaagg 794
Query: 207 aagatgaagacgataatgaggctgatatggaaataactttcactccaggcctggatgagt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aagatgaagacgataatgaggctgatatggaaataactttcactccaggcctggatgagt 854
Query: 267 ctggccaacaagataccaatgataacgaagaggaaagcaccattgataagattagacgta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ctggccaacaagataccaatgataacgaagaggaaagcaccattgataagattagacgta 914
Query: 327 aagaaaaagaaagacgtaagaagagaaaggacagagtcaaggagcttaagaaggaatcag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 aagaaaaagaaagacgtaagaagagaaaggacagagtcaaggagcttaagaaggaatcag 974
Query: 387 aagccaaattaaaggagaaccttaagaagaagaaagatacttctcacagcatcgatgacg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 aagccaaattaaaggagaaccttaagaagaagaaagatacttctcacagcatcgatgacg 1034
Query: 447 ataagaaaaagggagagttagagctcttaatgctagatgaaaatgagggtgaatcaacaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 ataagaaaaagggagagttagagctcttaatgctagatgaaaatgagggtgaatcaacaa 1094
Query: 507 ttaacaacaaggcacacttcaacatgaatgagattctcaaatctgagaaggaaaaatcca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 ttaacaacaaggcacacttcaacatgaatgagattctcaaatctgagaaggaaaaatcca 1154
Query: 567 aaaaggccaagtatcaaaacaaggagaagattgtggatgatgaattcactccagacgtta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1155 aaaaggccaagtatcaaaacaaggagaagattgtggatgatgaattcactccagacgtta 1214
Query: 627 atgatccaagatttaaagaggtctttgaagatcacgatttcgcgattgatcctactcaac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 atgatccaagatttaaagaggtctttgaagatcacgatttcgcgattgatcctactcaac 1274
Query: 687 cagagttcaagaagacaccagctatggagaagattttaaaggaacgtacagtacgttcaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 cagagttcaagaagacaccagctatggagaagattttaaaggaacgtacagtacgttcaa 1334
Query: 747 gcaaaaaatctaggggcaaaaagcgtaaccacgaaattgcaaatactgaacatagtaaag 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 gcaaaaaatctaggggcaaaaagcgtaaccacgaaattgcaaatactgaacatagtaaag 1394
Query: 807 acataaataagatcggcggnttagttgaaaaacttaaggccaagaacataggaac-aaac 865
||||||||||||||||||| |||||||||||||||||||||||||||| | |||| ||||
Sbjct: 1395 acataaataagatcggcggtttagttgaaaaacttaaggccaagaacaaaagaacaaaac 1454
Query: 866 actanatttgc-aacttgtggacactttatatcaacccaaagacgtccacatcttatatg 924
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1455 acta-atttgcaaacttgtggacactttatatcaacccaaagacgtccacatcttatatg 1513
Query: 925 tatatattcagcattttgattaaagcataaat 956
||||||||||||| ||||||||||||||||||
Sbjct: 1514 tatatattcagca-tttgattaaagcataaat 1544
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8712
Number of Sequences: 1807
Number of extensions: 8712
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)