BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZH10FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1622 0.0
>3x_Contig1786
Length = 33838
Score = 1622 bits (818), Expect = 0.0
Identities = 827/830 (99%)
Strand = Plus / Plus
Query: 87 ttcaaattccaattcagtatcaagctcaccggttacacagaattcacattccaactctgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28726 ttcaaattccaattcagtatcaagctcaccggttacacagaattcacattccaactctgt 28785
Query: 147 atcaggcctttcaaatacacaatcacatccattattgcacaatcatacgtcacatgaaca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28786 atcaggcctttcaaatacacaatcacatccattattgcacaatcatacgtcacatgaaca 28845
Query: 207 taacaaaccatcattaaaggtacagcattcaactgtaacattggatacctcacctcagcc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28846 taacaaaccatcattaaaggtacagcattcaactgtaacattggatacctcacctcagcc 28905
Query: 267 gaaccagcatcctgcagagtatcttcagagacaaatcgaacaatttaagctgcaaccacc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28906 gaaccagcatcctgcagagtatcttcagagacaaatcgaacaatttaagctgcaaccacc 28965
Query: 327 ccctaaattatcatcggccgataattcccatccaaaaccccatcacaagaaatcactccg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28966 ccctaaattatcatcggccgataattcccatccaaaaccccatcacaagaaatcactccg 29025
Query: 387 tttgaaacggttctttaagctccacgaacaatccggagagcaaaaacatgtagaacaaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29026 tttgaaacggttctttaagctccacgaacaatccggagagcaaaaacatgtagaacaaaa 29085
Query: 447 acaaccgacagcaaccgcagtcgttacagaccgtaaaactacaaaattgactttatacga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29086 acaaccgacagcaaccgcagtcgttacagaccgtaaaactacaaaattgactttatacga 29145
Query: 507 cgcagaagacgcccatgaattgatacagaagtatggtattccggggaaacttctcggcga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29146 cgcagaagacgcccatgaattgatacagaagtatggtattccggggaaacttctcggcga 29205
Query: 567 aggtgtttctggatctgtaagtgttgtaaaaggttcggataacactttgtttgcagtgaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29206 aggtgtttctggatctgtaagtgttgtaaaaggttcggataacactttgtttgcagtgaa 29265
Query: 627 aaaattcagaccaagagctgctagagagaccttgttggattattctaaaaaagttacgtc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29266 aaaattcagaccaagagctgctagagagaccttgttggattattctaaaaaagttacgtc 29325
Query: 687 tgaattttgtgtaggatcgtttttgcatcatcagaacgttatcgaaaccttggatatgct 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29326 tgaattttgtgtaggatcgtttttgcatcatcagaacgttatcgaaaccttggatatgct 29385
Query: 747 acaagagggagagcattttttggtagtaatggaatattgtcagtatgatttctttacatt 806
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 29386 acaagagggagagcattttttggtagtaatggaatattgtcagtatgatttcttcacatt 29445
Query: 807 ggttatgagtgatctaatggaaaagcatgaaatcgcatgctatttcaaacaaatctgtaa 866
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 29446 ggttatgagtgatctaatgggaaagcatgaaatcgcatgctatttcaaacaaatctgtaa 29505
Query: 867 tggaggtgcatatctacattctcaaggattggctcatagagatttgaagt 916
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29506 tggagttgcatatctacattctcaaggattggctcatagagatttgaagt 29555
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5873
Number of Sequences: 1807
Number of extensions: 5873
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)