BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZH10RM1.SCF screened BAC_end
         (920 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1783                                                         981   0.0  
3x_Contig1560                                                         714   0.0  

>3x_Contig1783 
          Length = 22123

 Score =  981 bits (495), Expect = 0.0
 Identities = 509/511 (99%), Gaps = 2/511 (0%)
 Strand = Plus / Minus

                                                                        
Query: 409  gtgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcga 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 gtgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcga 2276

                                                                        
Query: 469  gtatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatc 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2275 gtatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatc 2216

                                                                        
Query: 529  tttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttg 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2215 tttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttg 2156

                                                                        
Query: 589  tctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgat 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2155 tctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgat 2096

                                                                        
Query: 649  gcttatcctcggcaaagcagaccgattccgtgataaacgccaacattgcgttccaggaaa 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2095 gcttatcctcggcaaagcagaccgattccgtgataaacgccaacattgcgttccaggaaa 2036

                                                                        
Query: 709  agcttaagaggttgggtgaaattagacaatatagttacagatatggtgatagtgatgaag 768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2035 agcttaagaggttgggtgaaattagacaatatagttacagatatggtgatagtgatgaag 1976

                                                                        
Query: 769  tataagaaagttgtataggtagaaattagcactgtatattgtctaattatcaaatagacc 828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975 tataagaaagttgtataggtagaaattagcactgtatattgtctaattatcaaatagacc 1916

                                                                        
Query: 829  cgagctattttagctcgggtatttctttgatttacgtttagttccttttaccagtagtat 888
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1915 cgagctattttagctcgggtatttctttgatttacgtttagttcc-tttaccagtagtat 1857

                                           
Query: 889  ggttttttagctctcattctcttgttagtaa 919
             ||||||||||||||||||||||||||||||
Sbjct: 1856 -gttttttagctctcattctcttgttagtaa 1827


>3x_Contig1560 
          Length = 9209

 Score =  714 bits (360), Expect = 0.0
 Identities = 360/360 (100%)
 Strand = Plus / Minus

                                                                        
Query: 410  tgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcgag 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8675 tgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcgag 8616

                                                                        
Query: 470  tatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatct 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8615 tatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatct 8556

                                                                        
Query: 530  ttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttgt 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8555 ttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttgt 8496

                                                                        
Query: 590  ctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgatg 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8495 ctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgatg 8436

                                                                        
Query: 650  cttatcctcggcaaagcagaccgattccgtgataaacgccaacattgcgttccaggaaaa 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8435 cttatcctcggcaaagcagaccgattccgtgataaacgccaacattgcgttccaggaaaa 8376

                                                                        
Query: 710  gcttaagaggttgggtgaaattagacaatatagttacagatatggtgatagtgatgaagt 769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8375 gcttaagaggttgggtgaaattagacaatatagttacagatatggtgatagtgatgaagt 8316


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7992
Number of Sequences: 1807
Number of extensions: 7992
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 2
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)