BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC11ZH10RM1.SCF screened BAC_end (920 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1783 981 0.0 3x_Contig1560 714 0.0 >3x_Contig1783 Length = 22123 Score = 981 bits (495), Expect = 0.0 Identities = 509/511 (99%), Gaps = 2/511 (0%) Strand = Plus / Minus Query: 409 gtgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcga 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2335 gtgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcga 2276 Query: 469 gtatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatc 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2275 gtatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatc 2216 Query: 529 tttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttg 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2215 tttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttg 2156 Query: 589 tctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgat 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2155 tctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgat 2096 Query: 649 gcttatcctcggcaaagcagaccgattccgtgataaacgccaacattgcgttccaggaaa 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2095 gcttatcctcggcaaagcagaccgattccgtgataaacgccaacattgcgttccaggaaa 2036 Query: 709 agcttaagaggttgggtgaaattagacaatatagttacagatatggtgatagtgatgaag 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2035 agcttaagaggttgggtgaaattagacaatatagttacagatatggtgatagtgatgaag 1976 Query: 769 tataagaaagttgtataggtagaaattagcactgtatattgtctaattatcaaatagacc 828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1975 tataagaaagttgtataggtagaaattagcactgtatattgtctaattatcaaatagacc 1916 Query: 829 cgagctattttagctcgggtatttctttgatttacgtttagttccttttaccagtagtat 888 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1915 cgagctattttagctcgggtatttctttgatttacgtttagttcc-tttaccagtagtat 1857 Query: 889 ggttttttagctctcattctcttgttagtaa 919 |||||||||||||||||||||||||||||| Sbjct: 1856 -gttttttagctctcattctcttgttagtaa 1827 >3x_Contig1560 Length = 9209 Score = 714 bits (360), Expect = 0.0 Identities = 360/360 (100%) Strand = Plus / Minus Query: 410 tgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcgag 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8675 tgaaagagaagaagctaaagacagaagcggcatgatattgaaaagtctagttgaatcgag 8616 Query: 470 tatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatct 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8615 tatcaaatcgctccaggatccgatcgcctctcttgatgtgtcagaccttgccaccgatct 8556 Query: 530 ttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttgt 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8555 ttccaatgccttcatcgatggtgatatcaataccatagtcaatattctgcccgagtttgt 8496 Query: 590 ctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgatg 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8495 ctcactactgctccgctgcccacaggagatgcagaccatagcagaagacttcttgcgatg 8436 Query: 650 cttatcctcggcaaagcagaccgattccgtgataaacgccaacattgcgttccaggaaaa 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8435 cttatcctcggcaaagcagaccgattccgtgataaacgccaacattgcgttccaggaaaa 8376 Query: 710 gcttaagaggttgggtgaaattagacaatatagttacagatatggtgatagtgatgaagt 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8375 gcttaagaggttgggtgaaattagacaatatagttacagatatggtgatagtgatgaagt 8316 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7992 Number of Sequences: 1807 Number of extensions: 7992 Number of successful extensions: 62 Number of sequences better than 1.0e-20: 2 length of query: 920 length of database: 10,358,551 effective HSP length: 16 effective length of query: 904 effective length of database: 10,329,639 effective search space: 9337993656 effective search space used: 9337993656 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)