BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZA01FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1493 0.0
>3x_Contig1640
Length = 15521
Score = 1493 bits (753), Expect = 0.0
Identities = 803/812 (98%), Gaps = 6/812 (0%)
Strand = Plus / Plus
Query: 86 atgatggataaggatattagagaagctatgcagaaattcaaatcagagatggacaaatct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2026 atgatggataaggatattagagaagctatgcagaaattcaaatcagagatggacaaatct 2085
Query: 146 ggcataaatttgggtcctgaccaactagggcctttgatgaaagttctaggaatcgaaaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2086 ggcataaatttgggtcctgaccaactagggcctttgatgaaagttctaggaatcgaaaag 2145
Query: 206 aagtaatattgttcaatgacttcctgcatctcacttcctgattattcactggaagaatca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2146 aagtaatattgttcaatgacttcctgcatctcacttcctgattattcactggaagaatca 2205
Query: 266 tcaggcatgttgataatagactgtctgtttgtatactttatgtcaatagatatctatact 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 tcaggcatgttgataatagactgtctgtttgtatactttatgtcaatagatatctatact 2265
Query: 326 atacttttacaacaaatatgtatattttatgaaattatttcattgcaggattgattggct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 atacttttacaacaaatatgtatattttatgaaattatttcattgcaggattgattggct 2325
Query: 386 tggggttgtgatatattgaatgtaagtggaaatataccttgcactttggacatgattctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 tggggttgtgatatattgaatgtaagtggaaatataccttgcactttggacatgattctt 2385
Query: 446 agtttaatgaaatatcctttttttatttggccaagtaagataataaatccacctttgtga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2386 agtttaatgaaatatcctttttttatttggccaagtaagataataaatccacctttgtga 2445
Query: 506 caatatggactgggttcagaccctcagtaatgatagctgctgagttcttttcaaagaaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2446 caatatggactgggttcagaccctcagtaatgatagctgctgagttcttttcaaagaaag 2505
Query: 566 agttcaactcagacaaagttgtattgacatcgaaacgaacaaatatcttcttatgagact 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2506 agttcaactcagacaaagttgtattgacatcgaaacgaacaaatatcttcttatgagact 2565
Query: 626 tgtcggcgttataggaagagatgtcatcaaagttattcaacttacggaaatcaaagaaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2566 tgtcggcgttataggaagagatgtcatcaaagttattcaacttacggaaatcaaagaaca 2625
Query: 686 gacttttaatgctagaaacatccttggaagtggataatttctttaataattgagacaaag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2626 gacttttaatgctagaaacatccttggaagtggataatttctttaataattgagacaaag 2685
Query: 746 ttaccaaaccgcacaactttncatcctttgttaacacaggttagttgatcgaacgagtta 805
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 2686 ttaccaaaccgcacaactttccatcctttgttaacacagg-tagttgatcgaacgagtta 2744
Query: 806 tcttctaaaatcttgatgacagtagcaacaagaagcgtcttctttcaacagaagaccact 865
||| |||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct: 2745 tctcttaaaatcttgatgacagtagcaac-agaagcgtcttc-ttcaacag-agaccact 2801
Query: 866 ggtttcaagtttcaaattccttcacggtggca 897
||||||||| |||||| |||||||||||||||
Sbjct: 2802 ggtttcaag-ttcaaa-tccttcacggtggca 2831
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8264
Number of Sequences: 1807
Number of extensions: 8264
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)