BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZA03RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1414 1661 0.0
>3x_Contig1414
Length = 7923
Score = 1661 bits (838), Expect = 0.0
Identities = 862/870 (99%)
Strand = Plus / Plus
Query: 42 gcttttgcaattggtttttacaattcttgggatgctttctctttcagtgtgtgagtgtta 101
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6997 gcttttgcaattggtttttacaatccttgggatgctttctctttcagtgtgtgagtgtta 7056
Query: 102 gcttctctatcgctggccaccattgcatacgatttaaccaagtgagttgaagtgatgaat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7057 gcttctctatcgctggccaccattgcatacgatttaaccaagtgagttgaagtgatgaat 7116
Query: 162 tttattacccggaaaacataacattataccaatatagcactatataatatcatcttttag 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 7117 tttattacccggaaaacataacattataccaatatagcactatataatatcatcataaag 7176
Query: 222 attgccttttgaggcgtgatggttatagttatattgtcacaatcatcgctttttcgattt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7177 attgccttttgaggcgtgatggttatagttatattgtcacaatcatcgctttttcgattt 7236
Query: 282 agatctcaagtttcgagcaactgaagtgattttgcgagcttgttttcttttcttgcttct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7237 agatctcaagtttcgagcaactgaagtgattttgcgagcttgttttcttttcttgcttct 7296
Query: 342 tttacgctttgaaggttttggactgctgttctctgtggcgcgtggtctttttttcaccgg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7297 tttacgctttgaaggttttggactgctgttctctgtggcgcgtggtctttttttcaccgg 7356
Query: 402 tgttctctgctgaggtgtttctgctttttcaatagtgactggaatatcagctgcgtctga 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7357 tgttctctgctgaggtgtttctgctttttcaatagtgactggaatatcagctgcgtctga 7416
Query: 462 ctcttcattttcgatttcaattggaatcgagcctgctcgggtagatgtttctagtttttg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7417 ctcttcattttcgatttcaattggaatcgagcctgctcgggtagatgtttctagtttttg 7476
Query: 522 accaggagacgtaataggatttgcgtcgcttggagccaagtgaagttcagtggtatcatc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7477 accaggagacgtaataggatttgcgtcgcttggagccaagtgaagttcagtggtatcatc 7536
Query: 582 gatgataactgaggtcggagttgtatcaacgtcttcatccggagtgtccttgggtagatc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7537 gatgataactgaggtcggagttgtatcaacgtcttcatccggagtgtccttgggtagatc 7596
Query: 642 catgcctccataatgtttaattttgtccgttgttttattaatcatttctagtgtttgtag 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7597 catgcctccataatgtttaattttgtccgttgttttattaatcatttctagtgtttgtag 7656
Query: 702 tgcttcggcatcatgcaattcatttgattctttaactgagtgaacttcctccgaaacata 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7657 tgcttcggcatcatgcaattcatttgattctttaactgagtgaacttcctccgaaacata 7716
Query: 762 agactcttccccagagtgattttcagatttgttttcttcatggtcctgattgtgttcagg 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7717 agactcttccccagagtgattttcagatttgttttcttcatggtcctgattgtgttcagg 7776
Query: 822 ttcagaaggcgcgctgttattctcagaatgattcgaattagctgagtcccgatctgattc 881
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7777 ttcagaaggcgcgctgttattctcagaatgattcgaattagctgagtccgaatctgattc 7836
Query: 882 tggttaaatcggatccactaaacttgcaaa 911
|| | |||||||||||||||||||||||||
Sbjct: 7837 tgttaaaatcggatccactaaacttgcaaa 7866
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7255
Number of Sequences: 1807
Number of extensions: 7255
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)