BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC12ZA04FM1.SCF screened BAC_end (835 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1512 658 0.0 >3x_Contig1512 Length = 8803 Score = 658 bits (332), Expect = 0.0 Identities = 383/394 (97%), Gaps = 7/394 (1%) Strand = Plus / Minus Query: 85 ggaaactcataatgacatcacgtatctaaacaaccgtgctgcagcagaatatgaaaaagg 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 529 ggaaactcataatgacatcacgtatctaaacaaccgtgctgcagcagaatatgaaaaagg 470 Query: 145 tgattacgaggcagccatcgaaactctaacaaaggctgtggaacaaggtagagaactcag 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 tgattacgaggcagccatcgaaactctaacaaaggctgtggaacaaggtagagaactcag 410 Query: 205 agctgattacaatttcttttcaaaatctttcgctcgtatgggtaactcttaccacaagct 264 |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 agctgattacaaagtcatttcaaaatctttcgctcgtatgggtaactcttaccacaagct 350 Query: 265 tggcgatttaaagaaggctatcgactannctatgnnaaaaatctctaactgaacatcgta 324 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 349 tggcgatttaaagaaggctatcgacta--ctatg--aaaaatctctaactgaacatcgta 294 Query: 325 ccccagatatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcag 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 293 ccccagatatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcag 234 Query: 385 aatcttacatggaccctgaaaaggcagaagaagctagattacaagggtaagggaatactt 444 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | Sbjct: 233 aatcttacatggaccctgaaaaggcagaagaagctagattacaa-ggtaa-ggaatac-t 177 Query: 445 tcactaaggctgactggccaaaggctggcgaagc 478 ||||||||||||||||||||||||||| |||||| Sbjct: 176 tcactaaggctgactggccaaaggctgtcgaagc 143 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,075 Number of Sequences: 1807 Number of extensions: 16075 Number of successful extensions: 2247 Number of sequences better than 1.0e-20: 1 length of query: 835 length of database: 10,358,551 effective HSP length: 16 effective length of query: 819 effective length of database: 10,329,639 effective search space: 8459974341 effective search space used: 8459974341 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)