BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZA04FM1.SCF screened BAC_end
         (835 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1512                                                         658   0.0  

>3x_Contig1512 
          Length = 8803

 Score =  658 bits (332), Expect = 0.0
 Identities = 383/394 (97%), Gaps = 7/394 (1%)
 Strand = Plus / Minus

                                                                       
Query: 85  ggaaactcataatgacatcacgtatctaaacaaccgtgctgcagcagaatatgaaaaagg 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggaaactcataatgacatcacgtatctaaacaaccgtgctgcagcagaatatgaaaaagg 470

                                                                       
Query: 145 tgattacgaggcagccatcgaaactctaacaaaggctgtggaacaaggtagagaactcag 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgattacgaggcagccatcgaaactctaacaaaggctgtggaacaaggtagagaactcag 410

                                                                       
Query: 205 agctgattacaatttcttttcaaaatctttcgctcgtatgggtaactcttaccacaagct 264
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agctgattacaaagtcatttcaaaatctttcgctcgtatgggtaactcttaccacaagct 350

                                                                       
Query: 265 tggcgatttaaagaaggctatcgactannctatgnnaaaaatctctaactgaacatcgta 324
           |||||||||||||||||||||||||||  |||||  ||||||||||||||||||||||||
Sbjct: 349 tggcgatttaaagaaggctatcgacta--ctatg--aaaaatctctaactgaacatcgta 294

                                                                       
Query: 325 ccccagatatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcag 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ccccagatatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcag 234

                                                                       
Query: 385 aatcttacatggaccctgaaaaggcagaagaagctagattacaagggtaagggaatactt 444
           |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct: 233 aatcttacatggaccctgaaaaggcagaagaagctagattacaa-ggtaa-ggaatac-t 177

                                             
Query: 445 tcactaaggctgactggccaaaggctggcgaagc 478
           ||||||||||||||||||||||||||| ||||||
Sbjct: 176 tcactaaggctgactggccaaaggctgtcgaagc 143


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,075
Number of Sequences: 1807
Number of extensions: 16075
Number of successful extensions: 2247
Number of sequences better than 1.0e-20: 1
length of query: 835
length of database: 10,358,551
effective HSP length: 16
effective length of query: 819
effective length of database: 10,329,639
effective search space: 8459974341
effective search space used: 8459974341
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)