BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZA04RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1604 0.0
>3x_Contig1801
Length = 57606
Score = 1604 bits (809), Expect = 0.0
Identities = 853/861 (99%), Gaps = 5/861 (0%)
Strand = Plus / Plus
Query: 51 caggtgggatcttgggtcttggtgaaactgaagatgat-acattgggttcgttcacactt 109
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 14058 caggtgggatcttgggtcttggtgaaactgaagatgatcacattgggttcgttcacactt 14117
Query: 110 tggcaaatatgagtccacatccagaatctttacctattaatagattagtttccattaaag 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14118 tggcaaatatgagtccacatccagaatctttacctattaatagattagtttccattaaag 14177
Query: 170 gtacaccaatgcatgaggaacttaagaaggtcagcagtaagaaattgtatttcgatgaga 229
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 14178 gtacaccaatgcatgaggaacttaagaaggtcagcagtaagaaattggaattcgatgaga 14237
Query: 230 tcttaagaaccgtggcactagccagaattgtaatgccacaagcgattatcagattagctg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14238 tcttaagaaccgtggcactagccagaattgtaatgccacaagcgattatcagattagctg 14297
Query: 290 caggtcgttacacgatgaaggaaactgaacaattcttatgcttcatggcaggttgtaatg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14298 caggtcgttacacgatgaaggaaactgaacaattcttatgcttcatggcaggttgtaatg 14357
Query: 350 ccatctttgtcggtaaaaagatgttaacaactatgtgtacaggctgggatgaagacaaag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14358 ccatctttgtcggtaaaaagatgttaacaactatgtgtacaggctgggatgaagacaaag 14417
Query: 410 caatgctttcgaaatggggtctacaaccaatggaatcgttttcatattccgctaataagg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14418 caatgctttcgaaatggggtctacaaccaatggaatcgttttcatattccgctaataagg 14477
Query: 470 ctccagctgaggcagcgtgtgccgggggccaataaagaatggccatcttttagaaacact 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14478 ctccagctgaggcagcgtgtgccgggggccaataaagaatggccatcttttagaaacact 14537
Query: 530 ttctgtgtgtaatagtctttaatttctgtttattagttttctccatatactgggggaatc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14538 ttctgtgtgtaatagtctttaatttctgtttattagttttctccatatactgggggaatc 14597
Query: 590 attatttatccatattagtttaccaaatttataagctgcatattaagatgttagttatga 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14598 attatttatccatattagtttaccaaatttataagctgcatattaagatgttagttatga 14657
Query: 650 caaagggtaaatcggtcagtgagagagttagagaaaaagatggattagttattagttgta 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14658 caaagggtaaatcggtcagtgagagagttagagaaaaagatggattagttattagttgta 14717
Query: 710 gttgtagttgtttgtgaaaaagagcgcctcagacggttcaaaattcaagcagtggcagtt 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14718 gttgtagttgtttgtgaaaaagagcgcctcagacggttcaaaattcaagcagtggcagtt 14777
Query: 770 tccttctcttgttctggggctgtggtttcggctggttcttcaccaccacattgagtgagc 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14778 tccttctcttgttctggggctgtggtttcggctggttcttcaccaccacattgagtgagc 14837
Query: 830 aaataagaaacatttagcg-ttggttcgatattttcaagcttagattgag-tcaaagtag 887
|||||||||||| | |||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct: 14838 aaataagaaaca-taagcgtttggttcgatattttcaagcttaga-tgagttcaaagtag 14895
Query: 888 cttcgccaccgtattcttttg 908
|||||||||||||||||||||
Sbjct: 14896 cttcgccaccgtattcttttg 14916
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6293
Number of Sequences: 1807
Number of extensions: 6293
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)