BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZA07FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1384 1515 0.0
>3x_Contig1384
Length = 9372
Score = 1515 bits (764), Expect = 0.0
Identities = 825/836 (98%), Gaps = 7/836 (0%)
Strand = Plus / Minus
Query: 86 tgaaatctgttggtgtcactttgtgtaagaactcgatcgattttggcccctttaaagtac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4123 tgaaatctgttggtgtcactttgtgtaagaactcgatcgattttggcccctttaaagtac 4064
Query: 146 tttgcaacatatgggaaacatcgaacaagccagcatgttctctggtccattggtgagatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4063 tttgcaacatatgggaaacatcgaacaagccagcatgttctctggtccattggtgagatt 4004
Query: 206 cgatatgggtagcatcccttgtataatactggcatgctgtaaccggcaaaagggaccata 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4003 cgatatgggtagca-cccttgtataatactggcatgctgtaaccggcaaaagggaccata 3945
Query: 266 gtaccccctagtgacacatgtaagtcatacaatgcagtcttcttcaaagcagcagatccc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3944 gtaccccctagtgacacatgtaagtcatacaatgcagtcttcttcaaagcagcagatccc 3885
Query: 326 gggctggaactgttaaatcttctgaactgtaacatcttcaatcgccgaaattagacttag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3884 gggctggaactgttaaatcttctgaactgtaacatcttcaatcgccgaaattagacttag 3825
Query: 386 tgttgttcagctgtctttatataaactgcaatttcttcagatgggatcggcactgcaagt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3824 tgttgttcagctgtctttatataaactgcaatttcttcagatgggatcggcactgcaagt 3765
Query: 446 tatcgctcttctacaatgagtttcttagagggttcttgtcggagtcaggatgctttatat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3764 tatcgctcttctacaatgagtttcttagagggttcttgtcggagtcaggatgctttatat 3705
Query: 506 acgcagaaatcgggcttttcgcatcatgtgaaaccaagtcaaatttgaatcatggtcaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3704 acgcagaaatcgggcttttcgcatcatgtgaaaccaagtcaaatttgaatcatggtcaag 3645
Query: 566 tcaaaacagaatatacagacaaggaagcaacaaacgtcagcttacttgcccaactgccgg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3644 tcaaaacagaatatacagacaaggaagcaacaaacgtcagcttacttgcccaactgccgg 3585
Query: 626 gagttgcccgttctgttatcattaaaagcagcatggcgatgaagataatgttttagcttt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3584 gagttgcccgttctgttatcattaaaagcagcatggcgatgaagataatgttttagcttt 3525
Query: 686 gttttcttgttgctttaggtaactctaactacaagtttacgttaatatgtacaggttttc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3524 gttttcttgttgctttaggtaactctaactacaagtttacgttaatatgtacagg-tttc 3466
Query: 746 atttcaaaatcaaaactaagtgtatatacaaattgatggatggttaacaataactaatca 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3465 atttcaaaatcaaaactaagtgtatatacaaattgatggatggttaacaataactaatca 3406
Query: 806 acgatgcccttatgatatcagacagcaacttcttaaaagaaaggttctcgatttatcatt 865
|||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3405 acgatgccttaatgatatcagacagcaac-tcttaaaagaaaggttctcgatttatcatt 3347
Query: 866 ccctttttaggtttatcaaaaattccttgtaacatatggtattgccaactggtgat 921
||| |||||||||||||||| | |||| ||||||||| |||||| |||||||||||
Sbjct: 3346 ccc-ttttaggtttatcaaata-tcctcgtaacatat-gtattg-caactggtgat 3295
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6329
Number of Sequences: 1807
Number of extensions: 6329
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)