BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZA07RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1645 0.0
>3x_Contig1610
Length = 13981
Score = 1645 bits (830), Expect = 0.0
Identities = 853/862 (98%)
Strand = Plus / Plus
Query: 43 gcttgttctatagatgacctatcatctttcaaaatattcagagcatcataaacagccaac 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9004 gcttgttctatagatgacctatcatctttcaaaatattcagagcatcataaacagccaac 9063
Query: 103 tggcccttcttctcgtcgaaaaattcagtcatatcttgaatcatcttacttaatatctct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9064 tggcccttcttctcgtcgaaaaattcagtcatatcttgaatcatcttacttaatatctct 9123
Query: 163 ttcctgtactgaattccttccttggaggtcggttttgcggagaagtaatcattgggtacc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 9124 ttcctgtactgaattccttccttggaggtcggttttgcggagaagtaatcatcgggtacc 9183
Query: 223 tcccccttttcagctctaatcttctctcttctatactccgagacatggaaagaccttgta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9184 tcccccttttcagctctaatcttctctcttctatactccgagacatggaaagaccttgta 9243
Query: 283 cgaacccctaaccatctagtatatctagtaatagcaaccgacaacaacgttttggaggta 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9244 cgaacccctaaccatctagtatatctagtaatagcaaccgacaacaacgttttggaggta 9303
Query: 343 gctgggaggcctactaacacaataagtatcttaccggcatggaacaaacgtcctgattct 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9304 gctgggaggcctactaacacaataagtatcttaccggcatggaacaaacgtcctgattct 9363
Query: 403 gtcgaatataattggcccggggaaatataatccttagcaacatcagtatgaaccccatcg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9364 gtcgaatataattggcccggggaaatataatccttagcaacatcagtatgaaccccatcg 9423
Query: 463 atgagtttattaataaccttaggccttttttctgtagagccactagaccatcttttcctg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9424 atgagtttattaataaccttaggccttttttctgtagagccactagaccatcttttcctg 9483
Query: 523 gtccttgccatgtggtttccaggaaccggctttgtgattactacctcggaccctaatcca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9484 gtccttgccatgtggtttccaggaaccggctttgtgattactacctcggaccctaatcca 9543
Query: 583 tttatcaattcatcgtcatcagatacaatcgctgacattgtttattaatgcaatctttac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9544 tttatcaattcatcgtcatcagatacaatcgctgacattgtttattaatgcaatctttac 9603
Query: 643 tttgagaaacagtttcaaacttggtacaaaaatgactntgcaatataccagcagttgccc 702
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 9604 tttgagaaacagtttcaaacttggtacaaaaatgactttgcaatataccagcagttgccc 9663
Query: 703 ttatagatcaatgtaatcaccagctaccagctntattcactacgtctggtgtccggtttc 762
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9664 ttatagatcaatgtaatcaccagctaccagctttattcactacgtctggtgtccggtttc 9723
Query: 763 tcccagttctttacctgatatgtttactcaaaactaatagctatactgactgactncgct 822
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9724 tccaggttctttacctgatatgtttactcaaaactaatagctatactgactgactccgct 9783
Query: 823 gaaattttcgatttccttaaaatcatgtttctatggacttatcaaagggtagacttagtg 882
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9784 gaaattttcgatttcctaaaaatcatgtttctatggacttatcaaagggtagacttagtg 9843
Query: 883 aaaggatgggaaaaagcgnagg 904
|||| ||||||||||||| |||
Sbjct: 9844 aaagaatgggaaaaagcggagg 9865
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6061
Number of Sequences: 1807
Number of extensions: 6061
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)