BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZA08RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig905 1631 0.0
3x_Contig1017 186 5e-47
3x_Contig1237 103 6e-22
3x_Contig1622 101 2e-21
>3x_Contig905
Length = 2723
Score = 1631 bits (823), Expect = 0.0
Identities = 857/866 (98%), Gaps = 2/866 (0%)
Strand = Plus / Minus
Query: 52 gcttatataaaaagaattaacgttcacttcagttttatgatgtagtaatatttgagtata 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 gcttatataaaaagaattaacgttcacttcagttttatgatgtagtaatatttgagtata 1934
Query: 112 gcattttttggaagtaaaattttggtgaaataacgctgacgacatacgcttcattcatcc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 gcattttttggaagtaaaattttggtgaaataacgctgacgacatacgcttcattcatcc 1874
Query: 172 caagattaatttgtggatttgcgttgatttaaagaggtttttaagcaacattttttttaa 231
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 1873 caagattaatttgtggatttgcgttgatttaaagaggtttttaagcaacattcatataaa 1814
Query: 232 tgattcaagaaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgtt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 tgattcaagaaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgtt 1754
Query: 292 gggctctgcccgcgctggttcaaatcctgctggtgtcgttattttttttcgtttttaaat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753 gggctctgcccgcgctggttcaaatcctgctggtgtcgttattttttttcgtttttaaat 1694
Query: 352 tacacggacgaagaagcaagtgccatgtattgattgctgttgctcctactctgcatctgc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1693 tacacggacgaagaagcaagtgccatgtattgattgctgttgctcctactctgcatctgc 1634
Query: 412 taaactatggtggtttagtgtatccttattgccttattgagagtatttattgagtatata 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1633 taaactatggtggtttagtgtatccttattgccttattgagagtatttattgagtatata 1574
Query: 472 atatcgaccaggaatttgcagtaccagtcataatttcaaatcctgagcaagtttgatacc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1573 atatcgaccaggaatttgcagtaccagtcataatttcaaatcctgagcaagtttgatacc 1514
Query: 532 ctgggcaacattttgaaccctagcatctaacttgtacccctgttcagctagcttggccat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 ctgggcaacattttgaaccctagcatctaacttgtacccctgttcagctagcttggccat 1454
Query: 592 ctcatcggccatcgatgccagaggaactgtgaaacactcgatgaattcattctcttccag 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 ctcatcggccatcgatgccagaggaactgtgaaacactcgatgaattcattctcttccag 1394
Query: 652 ttctgaaactggattttggttctctggtaacgacatatcaacgattgctgtcaccaaaga 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1393 ttctgaaactggattttggttctctggtaacgacatatcaacgattgctgtcaccaaaga 1334
Query: 712 tagattcgtattagtgaatcctgggtcgttgaaaataataggggttgcatgtaggatttt 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1333 tagattcgtattagtgaatcctgggtcgttgaaaataataggggttgcatgtaggatttt 1274
Query: 772 accaacgtatccagtctcttctttcaattctcgcaatgctgctgtttcaatgctctctcc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1273 accaacgtatccagtctcttctttcaattctcgcaatgctgctgtttcaatgctctctcc 1214
Query: 832 gccgtcgatt-aaccagctggcatttc-atacatacaccttncaccggtggtctgaattg 889
|||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 1213 gccgtcgattaaaccagctggcatttcaatacatacaccttccaccggtggtctgaattg 1154
Query: 890 cttttgcaaaaggatctcattcggct 915
|||||||||||| ||||||| |||||
Sbjct: 1153 cttttgcaaaagaatctcatccggct 1128
>3x_Contig1017
Length = 3431
Score = 186 bits (94), Expect = 5e-47
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 241 aaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 aaattttggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 1869
Query: 301 ccgcgctggttcaaatcctgctggtgtcgttatttttt 338
||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 ccgcgctggttcaaatcctgctggtgtcgttatttttt 1907
>3x_Contig1237
Length = 6632
Score = 103 bits (52), Expect = 6e-22
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 285 atctgttgggctctgcccgcgctggttcaaatcctgctggtgtcgttatttttttt 340
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atctcttgggctctgcccgcgctggttcaaatcctgctggtgtcgttatttttttt 2070
>3x_Contig1622
Length = 13445
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 245 ttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgcccgc 304
||||||| ||||||||| ||||||||||| ||| | ||||||| |||||||||||||||
Sbjct: 4244 ttaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgc 4303
Query: 305 gctggttcaaatcctgctggtgtcgttattttttt 339
|| ||||| | |||||||| |||||||||||||||
Sbjct: 4304 gcaggttcgagtcctgctgttgtcgttattttttt 4338
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7514
Number of Sequences: 1807
Number of extensions: 7514
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 4
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)