BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZA09RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1540 1629 0.0
>3x_Contig1540
Length = 9505
Score = 1629 bits (822), Expect = 0.0
Identities = 858/868 (98%), Gaps = 2/868 (0%)
Strand = Plus / Minus
Query: 52 aggtcgacagctgcttcagtgtgaccacgtctggccagaacaccgccttctttggctctt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5301 aggtcgacagctgcttcagtgtgaccacgtctggccagaacaccgccttctttggctctt 5242
Query: 112 aatggcaccacatgaccaggcttcaagtaatcaatagcggtagtagtcttgtcagcaagt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5241 aatggcaccacatgaccaggcttcaagtaatcaatagcggtagtagtcttgtcagcaagt 5182
Query: 172 ttggaacacgttaatgcacgatcatgtgctgaaatccctgttgtggttccgtgtgcataa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5181 ttggaacacgttaatgcacgatcatgtgctgaaatccctgttgtggttccgtgtgcataa 5122
Query: 232 tcacaagtaatggtatatgcggttccatgtctgtcatctgcgtaactttcacacgaaaga 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5121 tcacaagtaatggtatatgcggttccatgtctgtcatctgcgtaactttcacacgaaaga 5062
Query: 292 tctttcaaaagaggtagatctaaacgatctgcccattcgttggtcattggtgcacaaaca 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5061 tctttcaaaagaggtagatctaaacgatctgcccattcgttggtcattggtgcacaaaca 5002
Query: 352 tacccagaagaataacgtatcaagaaggccatttgttcggtggtgatcgcattagccgca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5001 tacccagaagaataacgtatcaagaaggccatttgttcggtggtgatcgcattagccgca 4942
Query: 412 cagattaggtcaccttcgttctcacgtgactcgtcatccatcacaataacgaacttattc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4941 cagattaggtcaccttcgttctcacgtgactcgtcatccatcacaataacgaacttattc 4882
Query: 472 tgtctgaacttttctatggctacttcgatatcggtgaatatcatttttattgtattataa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4881 tgtctgaacttttctatggctacttcgatatcggtgaatatcatttttattgtattataa 4822
Query: 532 cttgctattggattaacctgattttaattgaagtgtaagataacaacgtttggcttaact 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4821 cttgctattggattaacctgattttaattgaagtgtaagataacaacgtttggcttaact 4762
Query: 592 agtcttaaccgttcactttactgtgactatggaataaatagatatctcaaaatagcctcc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4761 agtcttaaccgttcactttactgtgactatggaataaatagatatctcaaaatagcctcc 4702
Query: 652 gtacttccactggtatctttgaaagtgtccgatctcactgcttttatacacttaaacaat 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4701 gtacttccactggtatctttgaaagtgtccgatctcactgcttttatacacttaaacaat 4642
Query: 712 gaaatacagtcataaacaagagtcataagtaaaccatttcaattctttaccagtcttact 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4641 gaaatacagtcataaacaagagtcataagtaaaccatttcaattctttaccagtcttact 4582
Query: 772 ttcaaagtgtgtctaattttgcactctttcg-aatatcaacagattggtttcatgctttt 830
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4581 ttcaaagtgtgtctaattttgcactctttcgaaatatcaacagattggtttcatgcttta 4522
Query: 831 aacccataatgactaagtctttccggtcctccattgtnatgccggtaaaaaatttttctt 890
||||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||
Sbjct: 4521 aacccataatgactaagtc-ttccggtcctccattgtaatgccgtagaaaattttttctt 4463
Query: 891 tccacaanaatttactaataatcacatg 918
|||||| ||||||||||||||||||||
Sbjct: 4462 cccacaaaaatttactaataatcacatg 4435
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6017
Number of Sequences: 1807
Number of extensions: 6017
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)