BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZA11RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig652 1663 0.0
>3x_Contig652
Length = 2532
Score = 1663 bits (839), Expect = 0.0
Identities = 859/867 (99%)
Strand = Plus / Minus
Query: 52 cttaatgggtaagatttgtcctagtcaccagggtgttggaaataagccacagtatcttcg 111
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 cttaatgggtaagatttgtcccagtcaccagggtgttggaaataagccacagtatcttcg 1476
Query: 112 gaaagatcgaccattttcatagcttgaattgctacaggggaaatcttgttggcatccaaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 gaaagatcgaccattttcatagcttgaattgctacaggggaaatcttgttggcatccaaa 1416
Query: 172 tgaattcgtttgtagttaacgcaaagcttttggaatctttcagccatttgttttttgaaa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 tgaattcgtttgtagttaacgcaaagcttttggaatctttcagccatttgttttttgaaa 1356
Query: 232 tctaacaacatctcattttgaatatccaaatagtaggtatctagatcatataatctcgaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 tctaacaacatctcattttgaatatccaaatagtaggtatctagatcatataatctcgaa 1296
Query: 292 acagctattccatgcaattcaagattgtaagaataatcctgaatcaattgaggagttttc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 acagctattccatgcaattcaagattgtaagaataatcctgaatcaattgaggagttttc 1236
Query: 352 cacaacgtttggaaacaaacaatgaaacctgcgtaattaactgcagaagcgttttcaaga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 cacaacgtttggaaacaaacaatgaaacctgcgtaattaactgcagaagcgttttcaaga 1176
Query: 412 gtgaacgcttcacaggcactcttaaagaaaggcatttctgataccttcttcaagataggt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 gtgaacgcttcacaggcactcttaaagaaaggcatttctgataccttcttcaagataggt 1116
Query: 472 tgcgattgatagttttcgaccaatgcattcaaaaattcgaatactagaggcttgctatcg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 tgcgattgatagttttcgaccaatgcattcaaaaattcgaatactagaggcttgctatcg 1056
Query: 532 gttgaaagtgcagaaccatgaatattcacaaaacgaagtaagtaaggctccgggcaacct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 gttgaaagtgcagaaccatgaatattcacaaaacgaagtaagtaaggctccgggcaacct 996
Query: 592 atgctttggaagtagctaaaaatgtaagggtacaatcctctttggaatgtagtctttttc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 atgctttggaagtagctaaaaatgtaagggtacaatcctctttggaatgtagtctttttc 936
Query: 652 acattcgattcttcgaccaatttcataatgagctcgtcgtctttttgccttagggcgtat 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 acattcgattcttcgaccaatttcataatgagctcgtcgtctttttgccttagggcgtat 876
Query: 712 gtcaatatagtgctgggcatcgattccaatccacttggatacaataaataattnttgatt 771
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 875 gtcaatatagtgctgggcatcgattccaatccacttggatacaataaataatttttgatt 816
Query: 772 ntattatcgtttttcgtggtgttgaatgacgttttcatagggaaaatataattgtatatt 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ttattatcgtttttcgtggtgttgaatgacgttttcatagggaaaatataattgtatatt 756
Query: 832 cttttcaccaatggccaattagtattngagcagtttgcgatcatgaccaagtagaattca 891
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 755 cttttcaccaatggccaattagtattgaggcagtttgcgatcatgaccaagtagaattca 696
Query: 892 ttagagaatnctggtacccattttaat 918
| ||||||| |||||||||||||||||
Sbjct: 695 taagagaattctggtacccattttaat 669
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6693
Number of Sequences: 1807
Number of extensions: 6693
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)