BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZB01RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig482 549 e-156
3x_Contig1358 147 5e-35
>3x_Contig482
Length = 2187
Score = 549 bits (277), Expect = e-156
Identities = 303/311 (97%), Gaps = 1/311 (0%)
Strand = Plus / Plus
Query: 596 gcaatccagtcgtttaaagtctccccttgaagaggcttcaaaaactctgaaagcatagtc 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaatccagtcgtttaaagtctccccttgaagaggcttcaaaaactctgaaagcatagtc 60
Query: 656 agaaagtttggtttattttcaaccgcgaacaagttctgggtaatattagatacgctcatg 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaaagtttggtttattttcaaccgcgaacaagttctgggtaatattagatacgctcatg 120
Query: 716 tntgttctgtgaagatctttcaaagttgtaaagattgggtgtacttccgggttcaatgcc 775
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgttctgtgaagatctttcaaagttgtaaagattgggtgtacttccgggttcaatgcc 180
Query: 776 tcaataatagcgctgtcgctttcgttatctttattaagaaaagac-aaaaaagagggcga 834
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 181 tcaataatagcgctgtcgctttcgttatctttattaagaaaagacaaaaaaagagggcga 240
Query: 835 attggatattttccagaaagtggtanagctaacctcttaactttttcgaaagtatcagga 894
||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||
Sbjct: 241 attggatattttccagaaagtggtaaagctaactctttaactttttcgatagtatcagga 300
Query: 895 gtccctgtgat 905
|||| ||||||
Sbjct: 301 gtccttgtgat 311
>3x_Contig1358
Length = 7912
Score = 147 bits (74), Expect = 5e-35
Identities = 84/86 (97%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 50 gcttctgaaaacgaggcatggatatgaggaaaacaacgggttctttgaaatttcatccct 109
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 85 gcttctgaaaacgaggcatggaaa-gaggaaaacaacgggttctttgaaatttcatccct 27
Query: 110 ggataagaaaagttcgatattcaatt 135
||||||||||||||||||||||||||
Sbjct: 26 ggataagaaaagttcgatattcaatt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7962
Number of Sequences: 1807
Number of extensions: 7962
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)