BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC12ZB02FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 1566 0.0
>3x_Contig1543
Length = 9648
Score = 1566 bits (790), Expect = 0.0
Identities = 809/814 (99%), Gaps = 1/814 (0%)
Strand = Plus / Plus
Query: 88 tggttgaactataatttgacaggatagttaagaggattcctgaacatcacaataactttg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4116 tggttgaactataatttgacaggatagttaagaggattcctgaacatcacaataactttg 4175
Query: 148 caatacttaaacacaaacacaacacaaacacactcactctctttatgaacaacacgctat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4176 caatacttaaacacaaacacaacacaaacacactcactctctttatgaacaacacgctat 4235
Query: 208 gattatatgggctctcttatgctggccccttttcctcctccaggtggaactcctggcaca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4236 gattatatgggctctcttatgctggccccttttcctcctccaggtggaactcctggcaca 4295
Query: 268 atcgctttcacacattttctacatcgaagatagataagatacagcagtactttctgatat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4296 atcgctttcacacattttctacatcgaagatagataagatacagcagtactttctgatat 4355
Query: 328 tatatagaatatgtttatgatgtatacccccgccatggcgactttaacgatctcacattt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4356 tatatagaatatgtttatgatgtatacccccgccatggcgactttaacgatctcacattt 4415
Query: 388 tgcattttttaattaacattttatttataagactcttccttcatcttatattggttaacc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4416 tgcattttttaattaacattttatttataagactcttccttcatcttatattggttaacc 4475
Query: 448 tagtcgtgttcacatggatcttgatatccaaatcatcggtgctctcctcaatccgcttga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4476 tagtcgtgttcacatggatcttgatatccaaatcatcggtgctctcctcaatccgcttga 4535
Query: 508 tccgatcttgttgagaatctatctccttaccagtggtaatcgcaagtttctttaacctac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4536 tccgatcttgttgagaatctatctccttaccagtggtaatcgcaagtttctttaacctac 4595
Query: 568 cactgatttgtccaatcttatccaagttcttgtcgatttccatttccatttcatcatctt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4596 cactgatttgtccaatcttatccaagttcttgtcgatttccatttccatttcatcatctt 4655
Query: 628 cttcgtcgttctcgaactgataccttttagccttctctaagatctgctggttctggtacc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4656 cttcgtcgttctcgaactgataccttttagccttctctaagatctgctggttctggtacc 4715
Query: 688 gatcacgaacttcagatggaccatgtccactcgacatggcattctcgatacgtttcgtac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4716 gatcacgaacttcagatggaccatgtccactcgacatggcattctcgatacgtttcgtac 4775
Query: 748 tttggtgtaacgtcgacgtgatatcctcttgggtttgtttgtcctgcatcctttgtaact 807
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4776 tttggtgtaacgtcgacgtgatatcctcttggttttgtttgtcctgcatcctttgtaact 4835
Query: 808 ttatcttatcttccgctttgcgtgcacgtctcttactatggaacggattcgatacatgga 867
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4836 ttatcttatcttccgcttcgcgtgcacgtctcttactatggaacggattcgatacatgga 4895
Query: 868 ccgctaaaatgtttcgggttaaacttcttcaatt 901
||||||||||| ||| |||| |||||||||||||
Sbjct: 4896 ccgctaaaatg-ttccggtttaacttcttcaatt 4928
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6797
Number of Sequences: 1807
Number of extensions: 6797
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)