BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZB02RM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig540                                                         1513   0.0  
3x_Contig1109                                                         170   3e-42

>3x_Contig540 
          Length = 1644

 Score = 1513 bits (763), Expect = 0.0
 Identities = 869/898 (96%), Gaps = 5/898 (0%)
 Strand = Plus / Minus

                                                                       
Query: 48  gcttcagagacttttttagttttatttcaatctcaattgcatacgatgaactcgtatgca 107
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 898 gcttcagagacttttttagttttatttcaatctcaattgcatacgaggaactcgtatgca 839

                                                                       
Query: 108 attggaacctatactctaaaatctgtcactcatactctcttatatactatggcaaaaaaa 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 attggaacctatactctaaaatctgtcactcatactctcttatatactatggcaaaaaaa 779

                                                                       
Query: 168 aggatttttttgaaaagtactgctgtattgaaattcaactgaatatttatg-agctacnc 226
           ||||     ||||||||||| |||||||||||||||||||||||||||||| ||| || |
Sbjct: 778 aggagcaccttgaaaagtacagctgtattgaaattcaactgaatatttatgtagcaactc 719

                                                                       
Query: 227 atctaatatagtcatttggttcccactgacgatgatgttgccaaatatgccatggtattt 286
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agctaatatagtcatttggttcccactgacgatgatgttgccaaatatgccatggtattt 659

                                                                       
Query: 287 gatttatattacctaaactgttatatggtttattatactgaagtaatgcagccgatacaa 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gatttatattacctaaactgttatatggtttattatactgaagtaatgcagccgatacaa 599

                                                                       
Query: 347 aaaaataaaaaaagaaactcggtcagaggctgagaaaaccagattcaattcactgctgtg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaaaataaaaaaagaaactcggtcagaggctgagaaaaccagattcaattcactgctgtg 539

                                                                       
Query: 407 ttcaataatgttgatgagctgagctgagttcaaatgacaattttaagattctaaggcatt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttcaataatgttgatgagctgagctgagttcaaatgacaattttaagattctaaggcatt 479

                                                                       
Query: 467 tcttcactgttaaaagcctctgcattttgagccaaaaagaatccacaaagtcaccgactt 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcttcactgttaaaagcctctgcattttgagccaaaaagaatccacaaagtcaccgactt 419

                                                                       
Query: 527 ttgatggtggaatgttctagatatccactcgtgaaagcaacattattctacgttcacgat 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgatggtggaatgttctagatatccactcgtgaaagcaacattattctacgttcacgat 359

                                                                       
Query: 587 tttgtttttggtgtttatggttttaattctaatataaacgaattgacgcttctaagctgt 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tttgtttttggtgtttatggttttaattctaatataaacgaattgacgcttctaagctgt 299

                                                                       
Query: 647 gcttaaatttctatgcagtataaatggaaaaaatttactttttcataaagattggagggt 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gcttaaatttctatgcagtataaatggaaaaaatttactttttcataaagattggagggt 239

                                                                       
Query: 707 tggccgagtggtctaaggcggcagacttaagatctgttggacaattgtccgcgcgagttc 766
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tggccgagtggtctaaggcggcagacttaagatctgttggacaattgtccgcgcgagttc 179

                                                                       
Query: 767 gaacctcgcattcttcattactttttac-ttttttttcaaatccagattt-atactcatg 824
           ||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 178 gaacctcgcatccttcattactttttactttttttttcaaatccagatttaatactcatg 119

                                                                       
Query: 825 ttttacaaagcctaatattaagccttt-tctgctgatgattggcatgcgcttcaagcaca 883
           ||| ||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 118 tttaacatagcctaatattaagcctttctctgctgatgattcgcatgcgcttcaagcaca 59

                                                                     
Query: 884 agatatgtggtttactattaacagccaat-aatgttaaaggcaaatatgagttatctg 940
           |||  | || ||||||||| |||| | || |||||||| |  ||||||||||||||||
Sbjct: 58  agacttttgttttactatttacagtctataaatgttaatgttaaatatgagttatctg 1


>3x_Contig1109 
          Length = 3474

 Score =  170 bits (86), Expect = 3e-42
 Identities = 92/94 (97%)
 Strand = Plus / Minus

                                                                       
Query: 699 tggagggttggccgagtggtctaaggcggcagacttaagatctgttggacaattgtccgc 758
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 422 tggagggttggccgagtggtctaaggcggcagacttaagatctgttggacgattgtccgc 363

                                             
Query: 759 gcgagttcgaacctcgcattcttcattacttttt 792
           ||||||||||||||||||| ||||||||||||||
Sbjct: 362 gcgagttcgaacctcgcatccttcattacttttt 329


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9248
Number of Sequences: 1807
Number of extensions: 9248
Number of successful extensions: 156
Number of sequences better than 1.0e-20: 2
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)