BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC12ZB03FM1.SCF screened BAC_end (930 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1204 486 e-137 3x_Contig1272 230 4e-60 >3x_Contig1204 Length = 5869 Score = 486 bits (245), Expect = e-137 Identities = 286/295 (96%), Gaps = 4/295 (1%) Strand = Plus / Plus Query: 585 tgatatctcttatcctcttcatcataattttgacccttgagctcatccaacaacactccc 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 tgatatctcttatcctcttcatcataattttgacccttgagctcatccaacaacactccc 68 Query: 645 ggtaatctgatagcatgtttcttactcatagctcgaatgtngt-gtcccaacaattgacg 703 |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 69 ggtaatctgatagcatgtttcttactcatagctcgaatgtgcttgtcccaacaattgacg 128 Query: 704 tttgctctaatctagntagagagctcggagtaaaataattagttacgatctcttcgaatt 763 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 tttgctctaatctagtaagagagctcggagtaaaataattagttacgatctcttcgaatt 188 Query: 764 ggccctggactattttgacaatgatagcaacagagctaggataagtaaatatgatgattt 823 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 189 ggccctggactattttgacaatgatagcaacagagctaggataagtaaatatgatga-tt 247 Query: 824 tttcgagaatatcagctgcagttcttcaatcaaactggtaaaatttcgggacaaa 878 ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| Sbjct: 248 tttcgagaatatcagctgcag-tcttcaatcaaactggt-aaatttcggaacaaa 300 >3x_Contig1272 Length = 8315 Score = 230 bits (116), Expect = 4e-60 Identities = 142/148 (95%), Gaps = 2/148 (1%) Strand = Plus / Minus Query: 86 tgagtttcgccatagtttctctagccgtaagaggttcttcttcttcttcttctacttctt 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 155 tgagtttcgccatagtttctctagccgtaagaggttcttcttcttcttcttctacttctt 96 Query: 146 catcgtaatcgtcatcgtcatcgtcatcttcgtcaccgccgtcatcctct-tcttcttcg 204 |||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| Sbjct: 95 catcgtaatcgtcatcgtcatcgtcatcgtcgtcaccgccgtcatcctctataatcttcg 36 Query: 205 tcgctgtcttctaatt-acgtagttgtt 231 |||||||||||| ||| ||||||||||| Sbjct: 35 tcgctgtcttcttattcacgtagttgtt 8 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,421 Number of Sequences: 1807 Number of extensions: 10421 Number of successful extensions: 557 Number of sequences better than 1.0e-20: 2 length of query: 930 length of database: 10,358,551 effective HSP length: 16 effective length of query: 914 effective length of database: 10,329,639 effective search space: 9441290046 effective search space used: 9441290046 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)