BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC12ZB03FM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1204                                                         486   e-137
3x_Contig1272                                                         230   4e-60

>3x_Contig1204 
          Length = 5869

 Score =  486 bits (245), Expect = e-137
 Identities = 286/295 (96%), Gaps = 4/295 (1%)
 Strand = Plus / Plus

                                                                       
Query: 585 tgatatctcttatcctcttcatcataattttgacccttgagctcatccaacaacactccc 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   tgatatctcttatcctcttcatcataattttgacccttgagctcatccaacaacactccc 68

                                                                       
Query: 645 ggtaatctgatagcatgtttcttactcatagctcgaatgtngt-gtcccaacaattgacg 703
           ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||
Sbjct: 69  ggtaatctgatagcatgtttcttactcatagctcgaatgtgcttgtcccaacaattgacg 128

                                                                       
Query: 704 tttgctctaatctagntagagagctcggagtaaaataattagttacgatctcttcgaatt 763
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tttgctctaatctagtaagagagctcggagtaaaataattagttacgatctcttcgaatt 188

                                                                       
Query: 764 ggccctggactattttgacaatgatagcaacagagctaggataagtaaatatgatgattt 823
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 189 ggccctggactattttgacaatgatagcaacagagctaggataagtaaatatgatga-tt 247

                                                                  
Query: 824 tttcgagaatatcagctgcagttcttcaatcaaactggtaaaatttcgggacaaa 878
           ||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct: 248 tttcgagaatatcagctgcag-tcttcaatcaaactggt-aaatttcggaacaaa 300


>3x_Contig1272 
          Length = 8315

 Score =  230 bits (116), Expect = 4e-60
 Identities = 142/148 (95%), Gaps = 2/148 (1%)
 Strand = Plus / Minus

                                                                       
Query: 86  tgagtttcgccatagtttctctagccgtaagaggttcttcttcttcttcttctacttctt 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tgagtttcgccatagtttctctagccgtaagaggttcttcttcttcttcttctacttctt 96

                                                                       
Query: 146 catcgtaatcgtcatcgtcatcgtcatcttcgtcaccgccgtcatcctct-tcttcttcg 204
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||
Sbjct: 95  catcgtaatcgtcatcgtcatcgtcatcgtcgtcaccgccgtcatcctctataatcttcg 36

                                       
Query: 205 tcgctgtcttctaatt-acgtagttgtt 231
           |||||||||||| ||| |||||||||||
Sbjct: 35  tcgctgtcttcttattcacgtagttgtt 8


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,421
Number of Sequences: 1807
Number of extensions: 10421
Number of successful extensions: 557
Number of sequences better than 1.0e-20: 2
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)